Protein Alignment PABPC5 and LOC100490872

DIOPT Version :9

• Sequence 1: NP_543022.1
• Gene: PABPC5 / 140886
• HGNCID: 13629
• Length: 382
• Species: Homo sapiens
• Sequence 2: XP_002932728.2
• Gene: LOC100490872 / 100490872
• -ID: -
• Length: 449
• Species: Xenopus tropicalis
• Alignment Length: 234
• Identity: 80/234 - (34%)
• Similarity: 121/234 - (51%)
• Gaps: 29/234 - (12%)

Human   150 VHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN---VFVKNIGDDID 211
            |||:....|.|.: |...|.||            |...::....|..:.|.   ::|||...:||
 Frog     7 VHFEIQVEAKRVV-HAVDVLLN------------ESGMSDEHVNDTESKTKTCPIYVKNFVKEID 58

Human   212 DEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276
            ::   :.|.:.|  .|.|:|.:..|:...||.:.:...:.|.:||..:.|..|     |:.:|:.
 Frog    59 ED---DFFGKCG--ASTKIINNDCGQQTEFGLLPFNKQKDAIRAVDKMKGMDI-----YLAQAKI 113

Human   277 KIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK 341
            |.:|..|..::.|.|   .|.|...|.:|:|||...|:|.:|.:||:.||.|:.||||.|.|:.|
 Frog   114 KEKRQTEFSKKPEPL---HKPRYNSVNLYVKNLSYEIDDYRLNKEFAPFGIITSAKVMREGGRSK 175

Human   342 GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380
            |||.||||:..||.||:..|||:|:.||||:|...|.::
 Frog   176 GFGFVCFSTPAEARKALSGMNGKILASKPLYVAWAQRKQ 214

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PABPC5	NP_543022.1	PABP-1234	22..>379	CDD:130689	80/231 (35%)
LOC100490872	XP_002932728.2	PABP-1234	<7..431	CDD:130689	80/234 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
NCBI	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D225999at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920