DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ACTRT2 and act1

DIOPT Version :9

Sequence 1:NP_536356.3 Gene:ACTRT2 / 140625 HGNCID:24026 Length:377 Species:Homo sapiens
Sequence 2:NP_595618.1 Gene:act1 / 2540051 PomBaseID:SPBC32H8.12c Length:375 Species:Schizosaccharomyces pombe


Alignment Length:369 Identity:178/369 - (48%)
Similarity:255/369 - (69%) Gaps:2/369 - (0%)


- Green bases have known domain annotations that are detailed below.


Human    11 AVIFDNGSGFCKAGLSGEFGPRHMVSSIVGHLKFQAPSAEANQKKYFVGEEALYKQEALQLHSPF 75
            |::.|||||.||||.:|:..||.:..||||..:.........||..:||:||..|:..|.|..|.
pombe     7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPI 71

Human    76 ERGLITGWDDVERLWKHLFEWELGVKPSDQPLLATEPSLNPRENREKMAEVMFENFGVPAFYLSD 140
            |.|::..|||:|::|.|.|..||.|.|.:.|.|.||..|||:.|||||.:::||.|..||||::.
pombe    72 EHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAI 136

Human   141 QAVLALYASACVTGLVVDSGDAVTCTVPIFEGYSLPHAVTKLHVAGRDITELLMQLLLASGHTFP 205
            ||||:||||...||:|:||||.||.||||:|||:||||:.:|.:||||:|:.||::|:..|:||.
pombe   137 QAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFS 201

Human   206 CQLDKGLVDDIKKKLCYVALEPEKEL--SRRPEEVLREYKLPDGNIISLGDPLHQAPEALFVPQQ 268
            ...::.:|.|||:|||||||:.|:||  :.:...:.:.|:||||.:|::|:...:||||||.|..
pombe   202 TTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSA 266

Human   269 LGSQSPGLSNMVSSSITKCDTDIQKILFGEIVLSGGTTLFHGLDDRLLKELEQLASKDTPIKITA 333
            ||.::.|:.....:||.|||.||:|.|:|.:|:|||||::.|:.||:.||::.||.....:||.|
pombe   267 LGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVA 331

Human   334 PPDRWFSTWIGASIVTSLSSFKQMWVTAADFKEFGTSVVQRRCF 377
            ||:|.:|.|||.||:.|||:|:|||::..::.|.|..:|.|:||
pombe   332 PPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ACTRT2NP_536356.3 ACTIN 10..377 CDD:214592 176/367 (48%)
NBD_sugar-kinase_HSP70_actin 11..377 CDD:302596 176/367 (48%)
act1NP_595618.1 NBD_sugar-kinase_HSP70_actin 1..375 CDD:302596 176/367 (48%)
ACTIN 6..375 CDD:214592 176/367 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5277
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000057
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11937
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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