DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tre1 and Gpr84

DIOPT Version :9

Sequence 1:NP_001284901.1 Gene:Tre1 / 140439 FlyBaseID:FBgn0046687 Length:399 Species:Drosophila melanogaster
Sequence 2:XP_006521617.1 Gene:Gpr84 / 80910 MGIID:1934129 Length:429 Species:Mus musculus


Alignment Length:416 Identity:114/416 - (27%)
Similarity:174/416 - (41%) Gaps:102/416 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 ATQSIYPHSATL----FAAISACVFVTIGVLGNLITLLALLKSPTIREHATTAF---VISLSISD 82
            |..|.| |.:.|    ||.|........|.:||::|||||...|.:|    |.|   :.:|:::|
Mouse    40 ANFSCY-HESVLGYRYFAIIWGVAVAVTGTVGNVLTLLALAIRPKLR----TRFNLLIANLTLAD 99

  Fly    83 LLFCSFSLPLTAVRFFQESWTFGTTLCKIFPVIFYGNVAVSLLSMVGITLNRYILIACHSRYSQI 147
            ||:|:...|.:...:....|..|...|:||.::.:.:.:||:|::..|.|.||:|||....:.|:
Mouse   100 LLYCTLLQPFSVDTYLHLHWRTGAVFCRIFGLLLFTSNSVSILTLCLIALGRYLLIAHPKLFPQV 164

  Fly   148 YKPKFITLQLLFVWAVSFLLLLPPILGIWGEMGLDEATFSCTILKKEGRSIKKTLFVIGFLLPCL 212
            :..|.|.|.|:..|.|......|    :|....|.....:|:..:..||.....|..|.|:|...
Mouse   165 FSAKGIVLALVGSWVVGVTSFAP----LWNVFVLVPVVCTCSFDRMRGRPYTTILMGIYFVLGLS 225

  Fly   213 VIIVSYSCIYITV-----------LHQKKKIRNHD----------NFQ----------------- 239
            .:.|.|..|:..|           ||| ..||:|.          :||                 
Mouse   226 SVGVFYCLIHRQVKRAARALDQYGLHQ-ASIRSHQVAGTQEAMPGHFQELDSGVASRGPSEGISS 289

  Fly   240 --IAAA-----KGSSSSGGGSYMTTTCT-----------RKARED-------------NRLTVMM 273
              ::||     :|.||..||..:.....           ||.||.             .::|.|.
Mouse   290 EPVSAATTQTLEGDSSEAGGQGIRKAAQQIAERSLPEVHRKPRETAGARRATDAPSEFGKVTRMC 354

  Fly   274 VTIFLCFLVCFLPLMLANVVDDERNTSYPWLHIIASVMAWASSVINPIIYAASNRNYSESIFYFR 338
            ..:||||.:.::|.:|.|:: |.|..:...:|::|:.:.|.:|.|||::|||.||.       ||
Mouse   355 FAVFLCFALSYIPFLLLNIL-DARGRAPRVVHMVAANLTWLNSCINPVLYAAMNRQ-------FR 411

  Fly   339 VAYYKIFALLKFWGEPLSPMPSRNYH 364
            .||..|   ||     ..|...|.:|
Mouse   412 HAYGSI---LK-----RGPQSFRRFH 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tre1NP_001284901.1 7tm_1 52..323 CDD:278431 90/342 (26%)
Gpr84XP_006521617.1 7tmA_GPR84-like 54..414 CDD:320338 101/376 (27%)
TM helix 1 56..80 CDD:320338 10/23 (43%)
TM helix 2 89..111 CDD:320338 6/21 (29%)
TM helix 3 127..149 CDD:320338 6/21 (29%)
TM helix 4 172..188 CDD:320338 5/19 (26%)
TM helix 5 209..232 CDD:320338 6/22 (27%)
TM helix 6 348..373 CDD:320338 8/24 (33%)
TM helix 7 382..407 CDD:320338 10/24 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H41370
Inparanoid 1 1.050 136 1.000 Inparanoid score I4538
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45279
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm44162
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4597
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.000

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