DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tre1 and sNPF-R

DIOPT Version :9

Sequence 1:NP_001284901.1 Gene:Tre1 / 140439 FlyBaseID:FBgn0046687 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_001262086.1 Gene:sNPF-R / 40195 FlyBaseID:FBgn0036934 Length:600 Species:Drosophila melanogaster


Alignment Length:373 Identity:86/373 - (23%)
Similarity:151/373 - (40%) Gaps:117/373 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 FAAISACVFVTIGVLGNLITLLALLKSPTIREHATTAFVISLSISDLLFCSFSLPLTAVRFFQES 101
            |..:.|.||| :||.||::....:|::..: :..|..|:.:|::||:|.|..::|.|.:..|...
  Fly    66 FYVLYATVFV-LGVFGNVLVCYVVLRNRAM-QTVTNIFITNLALSDILLCVLAVPFTPLYTFMGR 128

  Fly   102 WTFGTTLCKIFPVIFYGNVAVSLLSMVGITLNRYILIACHSRYSQIY----KPKFITL--QLLFV 160
            |.||.:||.:.......::.:|.|::..|.::||.:|        ||    :.|..|.  .::.:
  Fly   129 WAFGRSLCHLVSFAQGCSIYISTLTLTSIAIDRYFVI--------IYPFHPRMKLSTCIGIIVSI 185

  Fly   161 WAVSFLLLLPPILGIW-------------GEMGLDEATF--------------------SCT--- 189
            |.::.|..:|  .|::             |...|.|||.                    |.|   
  Fly   186 WVIALLATVP--YGMYMKMTNELVNGTQTGNETLVEATLMLNGSFVAQGSGFIEAPDSTSATQAY 248

  Fly   190 -----------------ILKKEGRSIKKTLFVIG-------FLLPCLVIIVSYSCIYITV-LHQK 229
                             :..:|....::...|.|       |:||..:|.:.|  ::|:| |:|:
  Fly   249 MQVMTAGSTGPEMPYVRVYCEENWPSEQYRKVFGAITTTLQFVLPFFIISICY--VWISVKLNQR 311

  Fly   230 KKIRNHDNFQIAAAKGSSSSGGGSYMTTTCTRKARED-------NRLTVMMVTIFLCFLVCFLPL 287
            .:          |..||.||           |:...|       ||:.:.||.:   |.:.:||:
  Fly   312 AR----------AKPGSKSS-----------RREEADRDRKKRTNRMLIAMVAV---FGLSWLPI 352

  Fly   288 MLANVVDDERNTSYPW-----LHIIASVMAWASSVINPIIYAASNRNY 330
            .:.|:.||..:.|..|     ...:|..:|.:|:..||.:||..|.|:
  Fly   353 NVVNIFDDFDDKSNEWRFYILFFFVAHSIAMSSTCYNPFLYAWLNENF 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tre1NP_001284901.1 7tm_1 52..323 CDD:278431 75/349 (21%)
sNPF-RNP_001262086.1 7tm_4 75..>196 CDD:304433 34/132 (26%)
7tm_1 80..393 CDD:278431 75/349 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45459159
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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