DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tre1 and Lkr

DIOPT Version :9

Sequence 1:NP_001284901.1 Gene:Tre1 / 140439 FlyBaseID:FBgn0046687 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster


Alignment Length:390 Identity:82/390 - (21%)
Similarity:161/390 - (41%) Gaps:76/390 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EPAAATQSIYPHSATLFAAISACVFV----TIGVLGNLITLLALLKSPTIREHATTAFVISLSIS 81
            |..|..:.:|...|.:.|.:|  :|.    .:.|:||.:.:..:..:..:|. .|..::.:|:.:
  Fly    19 EEEAEFERLYAAPAEIVALLS--IFYGGISIVAVIGNTLVIWVVATTRQMRT-VTNMYIANLAFA 80

  Fly    82 DLLFCSFSLPLTAVRFFQESWTFGTTLCKIFPVIFYGNVAVSLLSMVGITLNRY--ILIACHSRY 144
            |::...|.:|........:||.....:|...|.:...:|.||:.::..|.::|:  |:....:|.
  Fly    81 DVIIGLFCIPFQFQAALLQSWNLPWFMCSFCPFVQALSVNVSVFTLTAIAIDRHRAIINPLRARP 145

  Fly   145 SQIYKPKFITLQLLFVWAVSFLLLLPPILGIWGE-----MGLDEATFSCT--------ILKKEGR 196
            :: :..|||   :..:|.::.|..:|..:....|     ...:..|::.|        :...:.:
  Fly   146 TK-FVSKFI---IGGIWMLALLFAVPFAIAFRVEELTERFRENNETYNVTRPFCMNKNLSDDQLQ 206

  Fly   197 SIKKTLFVIGFLLPCLVIIVSYSCIYITVLHQKKKIRNHDNFQIAAAKGSSSSGGGSYMTTTCTR 261
            |.:.||..:.:|:|..||    |.:||               |:|.....:.:.|.:..:...| 
  Fly   207 SFRYTLVFVQYLVPFCVI----SFVYI---------------QMAVRLWGTRAPGNAQDSRDIT- 251

  Fly   262 KAREDNRLTVMMVTIFLCFLVCFLPLMLANV-------VDDERNTSYPWLHIIASVMAWASSVIN 319
            ..:...::..|::.:.:.|.:|:|||.|.|:       ::|....|..|  .....:|.::|..|
  Fly   252 LLKNKKKVIKMLIIVVIIFGLCWLPLQLYNILYVTIPEINDYHFISIVW--FCCDWLAMSNSCYN 314

  Fly   320 PIIYAASNRNYSESIFYFRVAYYKIFA--LLKFWGEPLSPMPSRNYHQ---SKNSKELSGVIRST 379
            |.||...|..       |:..:.|.||  ..||       ..|.:.|:   |.:::..|  ||||
  Fly   315 PFIYGIYNEK-------FKREFNKRFAACFCKF-------KTSMDAHERTFSMHTRASS--IRST 363

  Fly   380  379
              Fly   364  363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tre1NP_001284901.1 7tm_1 52..323 CDD:278431 57/292 (20%)
LkrNP_647968.3 7tm_4 46..329 CDD:304433 62/316 (20%)
7tm_1 52..318 CDD:278431 57/292 (20%)
PHA03216 467..>519 CDD:177558
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45459147
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.