DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tre1 and mtnr1ba

DIOPT Version :10

Sequence 1:NP_001284901.1 Gene:Tre1 / 140439 FlyBaseID:FBgn0046687 Length:399 Species:Drosophila melanogaster
Sequence 2:NP_571470.1 Gene:mtnr1ba / 30669 ZFINID:ZDB-GENE-990415-157 Length:355 Species:Danio rerio


Alignment Length:307 Identity:81/307 - (26%)
Similarity:139/307 - (45%) Gaps:39/307 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 IGVLGNLITLLALLKSPTIREHATTAFVISLSISDLLFCSFSLPLTAVRFFQESWTFGTTLCKIF 112
            :.||||::.::::|::..:| :|..|||:||:.:|||...:..||.........|..|...||:.
Zfish    45 VDVLGNVLVIISVLRNRKLR-NAGNAFVVSLAFADLLVVCYPYPLVLHAMLHAGWLPGEMECKVS 108

  Fly   113 PVIFYGNVAVSLLSMVGITLNRYILIACHSRYSQIYKPKFITLQLLFVWAVSFLLLLPPILGIWG 177
            ..:...:|..|:.::..|.:|||..|...:.|.:||......:.|..||.::.:.:||.:  ..|
Zfish   109 GFLMGASVIGSIFNITAIAINRYCFICQANTYEKIYGRAGTLVLLTLVWVLTAIAILPNL--SLG 171

  Fly   178 EMGLDEATFSCTILKKEGRSIKKTLFVIGFLLPCLVIIVSYSCIYITVLHQKKKIRNHDNFQIAA 242
            .:..|...:|||..:.........:..:.||||..|:...|..|::.||..::::          
Zfish   172 SLTYDPRVYSCTFSQTTSAGYTIAVVTVHFLLPIAVVTFCYLRIWVLVLRVRRRV---------- 226

  Fly   243 AKGSSSSGGGSYMTTTCTRKAR-EDNRLTVMMVTIFLCFLVCFLPLM---LANVVDDER-NTSYP 302
                         ||....:.| .:.|..:.|..:|:.|.||:.||.   ||..||..| ....|
Zfish   227 -------------TTDVRPRLRPSELRHFLTMFVVFVLFAVCWAPLNLIGLAVAVDPPRVGPLVP 278

  Fly   303 -WLHIIASVMAWASSVINPIIYAASNRNYSESIFYFRVAYYKIFALL 348
             ||.:::..||:.:|.:|.::|...|:|       ||..|.:|...|
Zfish   279 DWLFVMSYFMAYFNSCLNAVVYGLLNQN-------FRREYRRILLSL 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tre1NP_001284901.1 7tmA_GPR84-like 37..341 CDD:320338 78/298 (26%)
TM helix 1 37..63 CDD:320338 5/14 (36%)
TM helix 2 71..94 CDD:320338 10/22 (45%)
TM helix 3 109..139 CDD:320338 8/29 (28%)
TM helix 4 153..171 CDD:320338 4/17 (24%)
TM helix 5 195..220 CDD:320338 6/24 (25%)
TM helix 6 264..294 CDD:320338 11/33 (33%)
TM helix 7 302..327 CDD:320338 8/25 (32%)
mtnr1baNP_571470.1 7tm_GPCRs 34..311 CDD:475119 78/298 (26%)
TM helix 1 35..59 CDD:410628 4/13 (31%)
TM helix 2 68..90 CDD:410628 10/21 (48%)
TM helix 3 106..128 CDD:410628 4/21 (19%)
TM helix 4 151..167 CDD:410628 4/15 (27%)
TM helix 5 190..213 CDD:410628 5/22 (23%)
TM helix 6 242..264 CDD:410628 7/21 (33%)
TM helix 7 279..304 CDD:410628 7/24 (29%)

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