DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tre1 and tmtops2

DIOPT Version :9

Sequence 1:NP_001284901.1 Gene:Tre1 / 140439 FlyBaseID:FBgn0046687 Length:399 Species:Drosophila melanogaster
Sequence 2:XP_017946618.1 Gene:tmtops2 / 100490436 XenbaseID:XB-GENE-990436 Length:390 Species:Xenopus tropicalis


Alignment Length:375 Identity:88/375 - (23%)
Similarity:156/375 - (41%) Gaps:79/375 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 TQSIYPHSATLFAAISACVFVTIGVLGNLITLLALLKSPTIREHATTAFVISLSISDLLFCSFSL 90
            |:::...:.....||.....:..|.|.|.:.|:...|..|:|. .....::::|.||:|.|....
 Frog    29 TEAVLSRTGHTVVAIFLGFILIFGFLNNFVVLILFCKFKTLRT-PVNMMLLNISASDMLVCVSGT 92

  Fly    91 PLTAVRFFQESWTFGTTLCKIFPVIFYGNV-----AVSLLSMVGITLNRYILIACHSRYSQIYKP 150
            .|:.....:..|..|...|:     :||.|     .|||:|:..::..||..:..:::....:|.
 Frog    93 TLSFTSSIKGKWIGGEYGCQ-----WYGFVNSCFGIVSLISLAILSYERYSTLTLYNKGGPNFKK 152

  Fly   151 KFITLQLLFVWAVSFLLLLPPILGIWGEMGLDEATFSCTILKKEGRSIKKT-----LFVIGFLLP 210
            ..  |.:...|..|.:..:||:|| |...|.:.|..||:: :....|::..     ||:....||
 Frog   153 AL--LAVASSWLYSLVWTVPPLLG-WSSYGREGAGTSCSV-RWTSESVESVSYIICLFIFCLALP 213

  Fly   211 CLVIIVSYSCIYITVLHQKKKIRNHDNFQIAAAKGSSSSGGGSYMTTTCTRKAREDNRLTVMMVT 275
            ..|::..|..:...| .|..|||     :|||.|                    .:..:..|::|
 Frog   214 VFVMLYCYGRLLYAV-KQVGKIR-----KIAARK--------------------REYHVLFMVIT 252

  Fly   276 IFLCFLVCFLP----LMLA-----NVVDDERNTSYPWLHIIASVMAWASSVINPIIYAASNRNYS 331
            ..:|:|:|:||    .:||     .|:.       |...::.|::|.:|:|.|||||...|:.  
 Frog   253 TVICYLLCWLPYGVVALLATFGRPGVIS-------PVASVVPSILAKSSTVFNPIIYILMNKQ-- 308

  Fly   332 ESIFYFRVAYYKIFALLKFWGEPLSPMPSR-----NYHQSKNSKELSGVI 376
                     :||.|.:| |...|.|....:     ||...:.:::|:.::
 Frog   309 ---------FYKCFLIL-FHCHPTSSADGKSICQSNYTVIQLNQKLNNIV 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tre1NP_001284901.1 7tm_1 52..323 CDD:278431 70/289 (24%)
tmtops2XP_017946618.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D321514at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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