DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBMXL3 and hnrnpdl

DIOPT Version :10

Sequence 1:NP_001138818.1 Gene:RBMXL3 / 139804 HGNCID:26859 Length:1067 Species:Homo sapiens
Sequence 2:NP_001011015.1 Gene:hnrnpdl / 496424 XenbaseID:XB-GENE-495016 Length:297 Species:Xenopus tropicalis


Alignment Length:288 Identity:69/288 - (23%)
Similarity:97/288 - (33%) Gaps:111/288 - (38%)


- Green bases have known domain annotations that are detailed below.


Human     7 PEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDMNG 71
            |:|:|:|||:.:|.|:.:|..||.:|.|..:.|..|.|||:.|||.|||:......|........
 Frog   110 PKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFH 174

Human    72 KYLDGKA-IMVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGG-GSSPQRPPSQGRPDDGR--- 131
            :...||. |.|||               |....|.:...:.:|| |::..|..::||   ||   
 Frog   175 QIGTGKCEIKVAQ---------------PKEVYRQQQQKQQKGGRGAATGRGGARGR---GRGQG 221

Human   132 ---GYAGYFDLWPYRAPMPRKRGPPPRHWASPPHKRATPSSLAHSVGCGMRGKAPTVSGQDGYSG 193
               ||:.|:|                          ....|..::.....:|...:.||.| |||
 Frog   222 WNQGYSNYYD--------------------------QNYGSYGNNGSYADQGYNNSYSGYD-YSG 259

Human   194 LQPRRWAGPPHKRAVPRSSLARIGGSGMPGKAPAVWGQDGYSGPRVREPLPPCRDPGDFVPALRD 258
            ..                                 :|..||:                  ....|
 Frog   260 YN---------------------------------YGSYGYN------------------QGYTD 273

Human   259 YSRRYYGHSSVPDYRPLRGDGN-QNGYR 285
            ||    |..|.  |...||.|| ||.|:
 Frog   274 YS----GQQST--YGKARGGGNHQNNYQ 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBMXL3NP_001138818.1 RRM_RBMX_like 7..86 CDD:409816 31/79 (39%)
PABP-1234 <10..206 CDD:130689 51/203 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 90..131 8/41 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 144..175 1/30 (3%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 267..305 9/20 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 357..1067
hnrnpdlNP_001011015.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
RRM1_hnRPDL 27..102 CDD:410152
RRM2_hnRPDL 112..186 CDD:409998 27/73 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 192..224 9/34 (26%)
Trnau1ap 223..>272 CDD:465438 15/126 (12%)
Blue background indicates that the domain is not in the aligned region.

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