DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBMXL3 and rsp-3

DIOPT Version :10

Sequence 1:NP_001138818.1 Gene:RBMXL3 / 139804 HGNCID:26859 Length:1067 Species:Homo sapiens
Sequence 2:NP_001370111.1 Gene:rsp-3 / 176688 WormBaseID:WBGene00004700 Length:258 Species:Caenorhabditis elegans


Alignment Length:380 Identity:92/380 - (24%)
Similarity:120/380 - (31%) Gaps:153/380 - (40%)


- Green bases have known domain annotations that are detailed below.


Human     8 EKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDMNGK 72
            :|:::|.|.....||.::..|.|||.|..|    |.|:.:...||||.||...||:.|.|..:|.
 Worm     9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69

Human    73 YLDGKAIMVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGGGSSPQRPPSQGRPDDGRGYAGYF 137
            ..||:.|.|..|        |.|.|              ||.|..|.:.....|..|.||..|  
 Worm    70 EFDGRRIRVEFT--------RGVGP--------------RGPGGRPLQDGGDHRGGDFRGGRG-- 110

Human   138 DLWPYRAPMPRKRGPPPRHWASPPHKRATPSSLAHSVGCGMRGKAPTVSGQDGYSGLQPRRWAGP 202
                                                   |.||..|  ..:.||           
 Worm   111 ---------------------------------------GGRGGGP--QRRTGY----------- 123

Human   203 PHKRAVPRSSLARIGGSGMPGKAPAVWGQDGYSGPRVREPLPPCRDPGDFVPALRDYSRRYYGHS 267
                        |:...|:|   |....||      :::.:   ||.||...|  |.:|...|..
 Worm   124 ------------RVIVEGLP---PTGSWQD------LKDHM---RDAGDVCYA--DVARDGTGVV 162

Human   268 SVPDYRPLRGDGNQNGYRGR---DHEYTDHPSKGSY---REPLKSYGGPCGAAPVWGTPPSYGGG 326
            ....|..::       |..|   |.::..|..:.:|   ||...|.||.             |||
 Worm   163 EFTRYEDVK-------YAVRKLDDTKFRSHEGETAYIRVREDNSSGGGS-------------GGG 207

Human   327 CRYEEYQGNSPDACSEGRSSEALPVVLPDAYSRDHSPKAYSGGRS-SSSNGYSRS 380
            .| :..:..||.|                  .|..||| ||..|| |.|...|||
 Worm   208 GR-DRSRSRSPRA------------------ERRASPK-YSPRRSRSRSRSRSRS 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBMXL3NP_001138818.1 RRM_RBMX_like 7..86 CDD:409816 29/77 (38%)
PABP-1234 <10..206 CDD:130689 46/195 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 90..131 9/40 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 144..175 0/30 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 267..305 8/43 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 357..1067 13/25 (52%)
rsp-3NP_001370111.1 RRM1_SRSF1_like 10..80 CDD:409775 28/73 (38%)
RRM2_SRSF1_like 123..196 CDD:410013 21/116 (18%)

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