Protein Alignment RBMXL3 and rsp-3

DIOPT Version :9

• Sequence 1: NP_001138818.1
• Gene: RBMXL3 / 139804
• HGNCID: 26859
• Length: 1067
• Species: Homo sapiens
• Sequence 2: NP_001370111.1
• Gene: rsp-3 / 176688
• WormBaseID: WBGene00004700
• Length: 258
• Species: Caenorhabditis elegans
• Alignment Length: 380
• Identity: 92/380 - (24%)
• Similarity: 120/380 - (31%)
• Gaps: 153/380 - (40%)

Human     8 EKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDMNGK 72
            :|:::|.|.....||.::..|.|||.|..|    |.|:.:...||||.||...||:.|.|..:|.
 Worm     9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69

Human    73 YLDGKAIMVAQTIKPAFKSSRWVPPTPGSGSRSRFSHRTRGGGSSPQRPPSQGRPDDGRGYAGYF 137
            ..||:.|.|..|        |.|.|              ||.|..|.:.....|..|.||..|
 Worm    70 EFDGRRIRVEFT--------RGVGP--------------RGPGGRPLQDGGDHRGGDFRGGRG-- 110

Human   138 DLWPYRAPMPRKRGPPPRHWASPPHKRATPSSLAHSVGCGMRGKAPTVSGQDGYSGLQPRRWAGP 202
                                                   |.||..|  ..:.||
 Worm   111 ---------------------------------------GGRGGGP--QRRTGY----------- 123

Human   203 PHKRAVPRSSLARIGGSGMPGKAPAVWGQDGYSGPRVREPLPPCRDPGDFVPALRDYSRRYYGHS 267
                        |:...|:|   |....||      :::.:   ||.||...|  |.:|...|..
 Worm   124 ------------RVIVEGLP---PTGSWQD------LKDHM---RDAGDVCYA--DVARDGTGVV 162

Human   268 SVPDYRPLRGDGNQNGYRGR---DHEYTDHPSKGSY---REPLKSYGGPCGAAPVWGTPPSYGGG 326
            ....|..::       |..|   |.::..|..:.:|   ||...|.||.             |||
 Worm   163 EFTRYEDVK-------YAVRKLDDTKFRSHEGETAYIRVREDNSSGGGS-------------GGG 207

Human   327 CRYEEYQGNSPDACSEGRSSEALPVVLPDAYSRDHSPKAYSGGRS-SSSNGYSRS 380
            .| :..:..||.|                  .|..||| ||..|| |.|...|||
 Worm   208 GR-DRSRSRSPRA------------------ERRASPK-YSPRRSRSRSRSRSRS 242

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RBMXL3	NP_001138818.1	RRM	<1..>81	CDD:223796	27/72 (38%)
		RRM_RBMX_like	7..86	CDD:240828	29/77 (38%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	90..131		9/40 (23%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	144..175		0/30 (0%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	267..305		8/43 (19%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	357..1067		13/25 (52%)
rsp-3	NP_001370111.1	RRM1_SRSF1_like	10..80	CDD:409775	28/73 (38%)
		RRM2_SRSF1_like	123..196	CDD:410013	21/116 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910