DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GAB3 and Gab2

DIOPT Version :10

Sequence 1:XP_011529405.1 Gene:GAB3 / 139716 HGNCID:17515 Length:611 Species:Homo sapiens
Sequence 2:NP_445869.2 Gene:Gab2 / 84477 RGDID:621367 Length:664 Species:Rattus norvegicus


Alignment Length:698 Identity:231/698 - (33%)
Similarity:333/698 - (47%) Gaps:146/698 - (20%)


- Green bases have known domain annotations that are detailed below.


Human     1 MSAG--DAVCTGWLVKSPPERKLQRYAWRKRWFVLRRGRMSGNPDVLEYYRNKHSSKPIRVIDLS 63
            ||.|  |.||||||.|||||:||:||||:||||:||.|||||:|||||||:|:||.||:|:|:|:
  Rat     1 MSGGGDDVVCTGWLRKSPPEKKLRRYAWKKRWFILRSGRMSGDPDVLEYYKNEHSKKPLRIINLN 65

Human    64 ECAVWKHVGPSFVRKEFQNNFVFIVKTTSRTFYLVAKTEQEMQVWVHSISQVCNLGHLEDGAADS 128
            .|. ....|.:|.:||.|::|||.:||:.|||||||:||.:|..||.||.|:|.....|: :.||
  Rat    66 FCE-QVDAGLTFNKKELQDSFVFDIKTSERTFYLVAETEADMNKWVQSICQICGFNQAEE-STDS 128

Human   129 MESL---SYTPSSLQPSSASSLLTAHAASSSLPRDDPNTNAVATEETRSESELLFL-----PDYL 185
            :.:|   |:.|.|.....:||........||.|...........|...|......|     .:||
  Rat   129 LRNLSSASHGPRSSPAEFSSSQHLLRERKSSAPSHSSQPTLFTFEPPMSSHMQPALSTSAPQEYL 193

Human   186 VLSNCETGRLHHTSLPTRCDSWSNSDRSLEQASFDDVFVD---CLQ------------PLPSSHL 235
            .|..|.:.|..:    :|..|:|...|.....:...:...   |:.            |.||.|.
  Rat   194 YLHQCISRRTEN----SRSASFSQGTRQKSDTAVQKLAQSNGHCINGVSNQVHGFYSLPKPSRHN 254

Human   236 VH--------P---SCHGSGAQEVPSSRPQAALIWS---------REINGPPRDHLS--SSPLLE 278
            ..        |   :.||.....:..|......:::         ||......|::.  ::||..
  Rat   255 TEFKDSTYDLPRSLASHGHTKSSLTGSETDNEDVYTFKMPSNTLCREFGDLLVDNMDVPTTPLSA 319

Human   279 SSLSSTIQVDKNQGSLPCGAKELDIMSNTPPPRPPKPSHLSERRQEEWSTHSGSKKPE------- 336
            ..:..|..:|||..::.........::  |||||||||.....|   |.  |..:||.       
  Rat   320 YQIPRTFTLDKNHNAMTVATSGDSAIA--PPPRPPKPSQAETPR---WG--SPQQKPPIGENSRS 377

Human   337 -CTLVPRRISLSGLDNMR---------------------TWKADVEGQSLRHRDKRLSLNLPCRF 379
             ...:|||.:|..:||.|                     :|.|:..|::...|..          
  Rat   378 VAATIPRRNTLPAMDNSRLHRASSCETYEYPTRGSGESASWSAESPGKTAVGRSN---------- 432

Human   380 SPMYPTASASIEDSYVPMSPQAGASGL------GPHCSPDDYIPMNSG----------SISSPL- 427
                   |||.:|:||||:|  |:|.|      |.: |...||||:.|          |.:.|: 
  Rat   433 -------SASSDDNYVPMNP--GSSTLLAMERAGDN-SQSAYIPMSPGPHHFDPLGYPSTALPIH 487

Human   428 --PELPANLEPPPVNRDLKPQRKSRPPPLDLRNLSIIRE---HASLTRT-----RTVPCSRTSFL 482
              |...:.::||||||:|||.||::|.||||||.::|.|   .:.:|::     .|...|.:.:.
  Rat   488 RGPSRGSEIQPPPVNRNLKPDRKAKPTPLDLRNNTVIDELPFKSPVTKSWSRINHTFNSSSSQYC 552

Human   483 SPERNGINSARFFANPVSREDEESYIEMEEHRTASSLSSGALTWTKK---FSLDYLALDFNSASP 544
            .|     .|.:...:..|.:.||:|:.|:...:||.:.||..:...:   .|:|||||||...||
  Rat   553 RP-----ISTQSITSTDSGDSEENYVPMQNPVSASPVPSGTNSPAPRKSTGSVDYLALDFQPGSP 612

Human   545 APMQQKLL--LSEEQRVDYVQVDEQKTQALQSTKQEWTDERQSKVKTK 590
            :|.::...  ::.:::|||||||::||||||:|.|||||.|||...:|
  Rat   613 SPHRKPSTSSVTSDEKVDYVQVDKEKTQALQNTMQEWTDVRQSSEPSK 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAB3XP_011529405.1 PH_Gab3 1..125 CDD:270184 75/125 (60%)
Gab2NP_445869.2 PH-like 5..127 CDD:473070 72/123 (59%)
Plasmodium_Vir <541..>627 CDD:329056 24/90 (27%)

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