DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptprv and Ptp4E

DIOPT Version :9

Sequence 1:NP_031981.3 Gene:Ptprv / 13924 MGIID:108027 Length:1705 Species:Mus musculus
Sequence 2:NP_001162669.1 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster


Alignment Length:1781 Identity:418/1781 - (23%)
Similarity:663/1781 - (37%) Gaps:486/1781 - (27%)


- Green bases have known domain annotations that are detailed below.


Mouse    77 GFPE-GQQLQAHTNESSFEFHGLVPGSRYQLELTVLRPCW---------QNVTITLTARTAPTVV 131
            |||| ...:.|.......:|...:||:.|..        |         :.:|.|:...|||...
  Fly    98 GFPEPNTTIPASDIGKDIKFSRALPGTEYNF--------WLYYTNSTHREQLTWTVNITTAPDPP 154

Mouse   132 RGLQLHSTGSPASLEASWSDASGDQDSYQLL------LYHPESHTLACNVSVSPDTLSYNFGDLL 190
            ..|.:....|.::........||....:::.      |....|::|..|     :||..:..:|.
  Fly   155 ANLSVQLRSSKSAFITWRPPGSGRYSGFRIRVLGLTDLPFERSYSLEGN-----ETLQLSAKELT 214

Mouse   191 PGSQYVLEVITWAGSLH------AKTSILQWTEPVPPDHLTLRALGTSSLQAFWNSSEGA---TW 246
            ||..|.::    |.|::      |.||....|:|..|....:.....::|...|.....|   |.
  Fly   215 PGGSYQVQ----AYSVYQGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPPFPAGIYTH 275

Mouse   247 FHLILT--DLLEGTNLTKVVRQ----GISTHTFLRLSPGTPYQLKICAAAGPHQIWGPNAIEW-T 304
            :.:.:|  |.::  ::..|.|:    |.:...|..|.||..|.:.:...:.......|....: |
  Fly   276 YRVSITPDDAIQ--SVLYVEREGEPPGPAQAAFKGLVPGREYNISVQTVSEDETSSVPTTARYLT 338

Mouse   305 YPSYPSDLVLTPLWNELWAS-------WKAGQ--GARDGY--VLKLSGPVENTTTLGPEECNA-- 356
            .|    :.||...::|.:.:       |:..:  ...|.|  :|..|..:.|.    |...|.  
  Fly   339 VP----ERVLNVTFDEAYTTSSSFRVRWEPPRTYSEFDAYQVMLSTSRRIFNV----PRAANGDS 395

Mouse   357 ---VFPGPLPPGH-YTLGLRVLAGPYDAW-VEGSIWLAESAARPMEVPGARL----------WLE 406
               .:|..|.||. |.:.::.:|...::| ..|.:.|   ..||:...|..|          | |
  Fly   396 VYFDYPDILEPGRTYEVVVKTIADNVNSWPASGEVTL---RPRPVRSLGGFLDDRSNALHISW-E 456

Mouse   407 GLEATKQPGRRALLY------SVDAP-GLLGNISVSSGATHVTFCGLVPGAHYRV-------DIA 457
            ..|..:|...|...:      .|.|| .:.....:::..|..|...|:.|..|.:       .:|
  Fly   457 PAETGRQDSYRISYHEQTNASEVPAPFPVAAESQITTNLTEYTLDSLLAGRRYLIAVQALSKGVA 521

Mouse   458 SSMGDITQSLTGYTSPLPPQSLEIISRNSPSDLTIGW-APAPGQMEGYKVTWHQDGSQRSPGDLV 521
            |:..|||:    ||.|..|...|:  |:....|.:.| :....:.:.|:|.:.::|::...    
  Fly   522 SNASDITR----YTRPAAPLIQEL--RSIDQGLMLSWRSDVNSRQDRYEVHYQRNGTREER---- 576

Mouse   522 DLGPDISSLTLKSLVPGSCYTVSAWAWSGNLSSDSQKIHSCTRPAPPTNLSLGFAH--------- 577
            .:..:.:|||:..|.|||.|.|...|.|..:.|:.........|.||.||:|...|         
  Fly   577 TMATNETSLTIHYLHPGSGYEVKVHAISHGVRSEPHSYFQAVFPKPPQNLTLQTVHTNLVVLHWQ 641

Mouse   578 ----------------------------------------------------------------- 577
                                                                             
  Fly   642 APEGSDFSEYVVRYRTDASPWQRISGLHENEARIKDMHYGERYLVQVNTVSFGVESPHPLELNVT 706

Mouse   578 ---QPAT----------LRASWCHPPGGRDAFQLRLYRLRPLTLESEKI----------LSQEAQ 619
               ||.:          |...|..|.|..|.:.|:.:.    |.|.:::          ||..:.
  Fly   707 MPPQPVSNVVPLVDSRNLTLEWPRPDGHVDFYTLKWWP----TDEEDRVEFKNVTQLEDLSSPSV 767

Mouse   620 NFSWAQLPAG--YEFQVQLSTLWGSEESGSANTTGWTPPSAPTLVNVTSEAPTQ-----LHVSWV 677
            ......|..|  |.|:||.|:  ....||:.:.:..|.|...:.|.:.:....|     :.:|:.
  Fly   768 RIPIEDLSPGRQYRFEVQASS--NGIRSGTTHLSTRTMPLIQSDVFIANAGHEQGQDETITLSYT 830

Mouse   678 HAAGDRSS---YQVTLYQESTRTATSIVGPKADSTSFWGLTPGTKYKVEAISWAGPLYTAAANVS 739
            ....|.:.   |:.::...:.:....:........||.|||||..|                ||:
  Fly   831 PTPADSTRFDIYRFSMGDPTIKDKEKLANDTERKLSFSGLTPGKLY----------------NVT 879

Mouse   740 AWT----------------YPLTPNELLASMQAGSAVVNLAWPSGPLGQGTCHAQLSDAGHLSW- 787
            .||                :||..::|.| :|..:..:.|.| :.|.|:.|..    :..:||. 
  Fly   880 VWTVSGGVASLPVQRLYRLHPLPISDLKA-IQVAAREITLHW-TAPAGEYTDF----ELQYLSAD 938

Mouse   788 EQPLSLGQDL-----LMLRNLIPGHTVSLSVKCRAGPLQA-------------STHPL-----VL 829
            |:...|.|::     :.|:.|.|.|..:.:|..|:|.:|.             |:.|:     .|
  Fly   939 EEAPQLLQNVTKNTEITLQGLRPYHNYTFTVVVRSGSIQGTDFADVSVSTLMRSSAPISASYQTL 1003

Mouse   830 SVEPGPVEDVFCQP------EATYLSLNWTMPTGD---------------------------VAV 861
            :..||.|:  :.||      |.|:   .|::...:                           |..
  Fly  1004 TAPPGKVD--YFQPSDVQPGEVTF---EWSLEPAEQHGPIDYFRITCQNADDAADVSSYEFPVNA 1063

Mouse   862 CLVEVEQLVPGGSAHFVFQVNTSEDALLLPNLTPTTSYRLSLTVLGGNRQWSRAVTLVCTTSAEV 926
            ...:::.||||.  |::|::...                 |....|..|:..:.:.::.....| 
  Fly  1064 TQGKIDGLVPGN--HYIFRIQAK-----------------SALGYGAEREHIQTMPILAPPVPE- 1108

Mouse   927 WHPPELAEAPQVELGTGMGVTVTRGMFGKDDGQIQWYGIIATINM-----TLAQPSQEAINHTWY 986
               |.:.........:.:.::..:|.|....|.::.|.||...::     .|..||       |.
  Fly  1109 ---PSVTPLEVSRTSSTIEISFRQGYFSNAHGMVRSYTIIIAEDVGKNASGLEMPS-------WQ 1163

Mouse   987 D-HYYRGHDSYLALLFPNPFYPEPWAVPRSWTV---PVGTEDCDNTQE-ICNGHLKPGFQYRFSI 1046
            | ..|.....|.|:...|||.....:...|...   .:||.:||..|. .|||.|:.|..||..|
  Fly  1164 DVQAYTVWLPYQAIEPYNPFLTSNGSRKSSLEAEHFTIGTANCDKHQAGYCNGPLRAGTTYRIKI 1228

Mouse  1047 AAFSR--------LSSP------ETILAFSAFSEPQASISLVAMPLTVMMGTVVGCIIIVCAVLC 1097
            .||:.        .|||      :|::..:..|    ::.||||.|          :::.|...|
  Fly  1229 RAFTDEDKFTDTVYSSPITTERSDTVIVAATVS----AVLLVAMVL----------VVVYCQHRC 1279

Mouse  1098 LLCRRRLKGPRSEKNGFSQEL--MPYNLWRTHRPIPSHSFRQSYEAKSARAHQAFFQEFEELKEV 1160
            .|.||..|..|.:     .||  :|......:||:....|.:.|...||.:...|.:||||||.|
  Fly  1280 QLIRRASKLARMQ-----DELAALPEGYITPNRPVHVKDFSEHYRIMSADSDFRFSEEFEELKHV 1339

Mouse  1161 GKDQPRLEAEHPANITKNRYPHVLPYDHSRVRLTQLSGEPHSDYINANFIPGYSHPQEIIATQGP 1225
            |:||....|..|.|..|||:.::|||||||.:|..:..:..|||||||::||::.|:|.|.||||
  Fly  1340 GRDQACSFANLPCNRPKNRFTNILPYDHSRFKLQPVDDDDGSDYINANYMPGHNSPREFIVTQGP 1404

Mouse  1226 LKKTLEDFWRLVWEQQVHVIIMLTVGMENGRVLCEHYWPVNSTPVTHGHITTHLLAEESEDEWTR 1290
            |..|.|:|||:.||.....|:|||...|.||..|:.||||:...:.:|.|...|:.:....:|:.
  Fly  1405 LHSTREEFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPVDRVAMFYGDIKVQLIIDTHYHDWSI 1469

Mouse  1291 REFQLQHGAEQKQRRVKQLQFTTWPDHSVPEAPSSLLAFVELVQEEVKATQGKGPILVHCSAGVG 1355
            .||.:....|  .|.::...||||||..|||.|.||:.||...::.:....  .||:||||||||
  Fly  1470 SEFMVSRNCE--SRIMRHFHFTTWPDFGVPEPPQSLVRFVRAFRDVIGTDM--RPIIVHCSAGVG 1530

Mouse  1356 RTGTFVALLRLLRQLEEEQVVDVFNTVYILRLHRPLMIQTLSQYIFLHSCLLNKILEGPS----- 1415
            |:|||:||.|:|:.:.:...||:|..|:.:|..|..|:||..||:.:|.||| .:|||..     
  Fly  1531 RSGTFIALDRILQHIHKSDYVDIFGIVFAMRKERVFMVQTEQQYVCIHQCLL-AVLEGKEHLLAD 1594

Mouse  1416 ----DASDS----------------GPIPVMNFAQACAKRAANANAGFLKEYRLLKQAIKDETGS 1460
                .|:|.                |.:|:    :|....|...:|..:..        |||   
  Fly  1595 SLELHANDGYEVTKIYLERQPQTKMGTLPI----RASLAMAEKLDADLMTN--------KDE--- 1644

Mouse  1461 LLPSPDYNQNSIASCHHSQEQLALV-----------------------EESPADNMLAASLFPGG 1502
                 |.:|.     ...|:||.|.                       ::.|.:|...|:|....
  Fly  1645 -----DEDQE-----QQQQQQLQLATEVKPKGSNDDEEDEEDDDDDDDDQQPLNNETTATLSSAS 1699

Mouse  1503 PSGRD---HVVLTGS-AGPKELWEMV 1524
            .|...   ||||..: ..||:..|.:
  Fly  1700 CSSSTHDVHVVLQEAIEKPKQEQERI 1725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtprvNP_031981.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 24..44
fn3 36..109 CDD:278470 9/32 (28%)
fn3 131..201 CDD:278470 14/75 (19%)
FN3 218..288 CDD:214495 16/78 (21%)
FN3 473..551 CDD:214495 20/78 (26%)
FN3 656..730 CDD:238020 14/81 (17%)
fn3 834..913 CDD:278470 17/111 (15%)
PTPc 1150..1408 CDD:214550 115/257 (45%)
PTPc 1176..1408 CDD:238006 101/231 (44%)
Substrate binding. /evidence=ECO:0000250 1350..1356 5/5 (100%)
PTPc <1521..1692 CDD:304379 1/4 (25%)
Ptp4ENP_001162669.1 FN3 151..242 CDD:238020 20/99 (20%)
fn3 247..328 CDD:278470 15/82 (18%)
fn3 343..417 CDD:278470 16/77 (21%)
fn3 443..525 CDD:278470 16/82 (20%)
FN3 548..611 CDD:238020 17/66 (26%)
FN3 620..706 CDD:238020 7/85 (8%)
fn3 708..796 CDD:278470 21/93 (23%)
fn3 824..886 CDD:278470 15/77 (19%)
fn3 902..978 CDD:278470 20/81 (25%)
fn3 1013..1092 CDD:278470 14/100 (14%)
UP_III_II 1106..>1248 CDD:297589 38/152 (25%)
PTPc 1329..1582 CDD:214550 114/256 (45%)
PTPc 1355..1582 CDD:238006 100/230 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19134
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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