Protein Alignment Nr2f1 and usp

DIOPT Version :9

• Sequence 1: NP_034281.2
• Gene: Nr2f1 / 13865
• MGIID: 1352451
• Length: 420
• Species: Mus musculus
• Sequence 2: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Alignment Length: 486
• Identity: 150/486 - (30%)
• Similarity: 210/486 - (43%)
• Gaps: 99/486 - (20%)

Mouse     5 VSSWRDPQDDVAGGNPGGPNPAAQAAR------GGGGGEQQQAGSGAPHTPQTPGQPGAPATPGT 63
            :|...|..:.........|.|..||..      |..........:|.....|.|...|..|   .
  Fly    23 ISQLNDSNNSSFSPKAESPVPFMQAMSMVHVLPGSNSASSNNNSAGDAQMAQAPNSAGGSA---A 84

Mouse    64 AGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPID 128
            |..:.|.||....|.....|.:|||::||||||.::|||||.||||:||::|||.||.||||.||
  Fly    85 AAVQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIID 149

Mouse   129 QHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTNGDPL----------------- 176
            :..||:|||||.:|||..||:|||||..|....:...|:.:.:.|...
  Fly   150 KRQRNRCQYCRYQKCLTCGMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGG 214

Mouse   177 ---------NG-HCYLSGYIS------------------------LLLRAEPYPTSRYGSQCMQP 207
                     || ..:::..:|                        ..||..||.|       :||
  Fly   215 GVSGGMGSGNGSDDFMTNSVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYST-------VQP 272

Mouse   208 NNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSM------ 266
            :....:..:|::..:.||..||:||.:|.|..:.:.|||.||:..|.||.:.|.|.||:
  Fly   273 DYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDG 337

Mouse   267 -----------------------PLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKA 308
                                   |..:. |..:...|.:......|.|..|  ||..|...|:|.
  Fly   338 GAGGGGGGLGHDGSFERRSPGLQPQQLF-LNQSFSYHRNSAIKAGVSAIFD--RILSELSVKMKR 399

Mouse   309 LHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPS 373
            |::|..|.||||||:|:..|..|:...|.||..:||....|:|:.|.::|....||.:||||||:
  Fly   400 LNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPA 464

Mouse   374 LRTVSSSVIEQLFFVRLVGKTPIETLIRDML 404
            ||::|....:.||..|:....|:|.|..:.|
  Fly   465 LRSISLKCQDHLFLFRITSDRPLEELFLEQL 495

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Nr2f1	NP_034281.2	NR_DBD_COUP_TF	83..155	CDD:143516	48/71 (68%)
		NR_LBD_COUP-TF	181..416	CDD:132746	79/277 (29%)
		Important for dimerization	341..420		24/64 (38%)
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	49/75 (65%)
		NR_LBD_RXR_like	237..480	CDD:132741	73/252 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X118
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.910