DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TRIM50 and dbl5

DIOPT Version :10

Sequence 1:NP_835226.2 Gene:TRIM50 / 135892 HGNCID:19017 Length:487 Species:Homo sapiens
Sequence 2:NP_587745.1 Gene:dbl5 / 2539314 PomBaseID:SPCC548.05C Length:468 Species:Schizosaccharomyces pombe


Alignment Length:99 Identity:28/99 - (28%)
Similarity:47/99 - (47%) Gaps:9/99 - (9%)


- Green bases have known domain annotations that are detailed below.


Human     9 ELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDGSSSLPNVSLAR 73
            :::..|:||||.|..:.|....|||:||..||::   .|.....||.|||.:....| |...:..
pombe    78 KIKKTLECPICTEALQRPFTTHCGHTYCYECLLN---WLKESKSCPTCRQKLYTQPS-PAYLVYE 138

Human    74 VIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELI 107
            ::..:.......|.|.: :.||    .:|.:|::
pombe   139 IMNVVAASNSGFPLVGI-NENP----AKKQKEVL 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRIM50NP_835226.2 RING-HC_TRIM50_like_C-IV 14..58 CDD:438267 18/43 (42%)
Bbox2_TRIM50-like 87..125 CDD:380845 5/21 (24%)
SPRY_PRY_TRIM50 283..469 CDD:293977
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 468..487
dbl5NP_587745.1 PHA02929 <16..125 CDD:222944 19/49 (39%)
RING-HC_ScPSH1-like 79..130 CDD:438230 20/53 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.