Protein Alignment Dscam and dpr13

DIOPT Version :9

• Sequence 1: XP_006522949.1
• Gene: Dscam / 13508
• MGIID: 1196281
• Length: 2034
• Species: Mus musculus
• Sequence 2: NP_001033956.2
• Gene: dpr13 / 3885598
• FlyBaseID: FBgn0034286
• Length: 419
• Species: Drosophila melanogaster
• Alignment Length: 435
• Identity: 94/435 - (21%)
• Similarity: 148/435 - (34%)
• Gaps: 113/435 - (25%)

Mouse   285 PSDSGSYVCEVSNRYGTAKVIGRLYVKQPL--------KATISPRKVKSSVGSQVSLSCSVTGNE 341
            |:.||.|      |....:|:.||.....|        ...|......:|.|...:::.::|
  Fly     2 PASSGLY------RIKNGRVLDRLQKPAALIFIIAYIAACGICDHTASASPGGGKTVAATMT--- 57

Mouse   342 DQELSWYRNGEILNPGKNVRITGLNHANLIMDHMVKSDGGAYQCFVRKDKLSAQDYVQVVLEDGT 406
                         .|.....:..:|. ||||....:.:....          .|.|.|.....|.
  Fly    58 -------------TPASEPSVRHINQ-NLIMSQSKEGEPVPV----------PQPYAQSAASAGG 98

Mouse   407 PKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEG-------- 463
            ..|.|..|..|:.            |...||.|..  .:.:|:...|...|...:.|
  Fly    99 SSITSFDSTNVID------------GQSQPTPTHL--QEAVLQTHSHSRIQAKDTAGPYPIPVHR 149

Mouse   464 --NVVSYLNISSSQVRDGG--------VYRCTANNSAGVVLYQARINVRGPASIRPMKN--ITAI 516
              .|.::|..::.  .:||        :|..|.|::  ||..|.......|.::..:..  ::.|
  Fly   150 PEPVENHLEANNG--IEGGMESLFGTPMYFGTENST--VVTTQIGATAHVPCTVHHIGEGVVSWI 210

Mouse   517 AGRDTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLVQP 581
            ..:|  .|...:|...||       :...|:...:....:.||::..||.. |.|.|.|.|...|
  Fly   211 RKKD--YHLLTVGLTTYS-------SDERFSATHLKHSEDWTLQIKFVQLR-DAGVYECQVSTHP 265

Mouse   582 QLSTSQSVHVTV-------KVPP--FIQPFEFPRFSIGQRVFIPC-VVVSGDLPITITWQKDGRP 636
              .||..:|::|       ..||  ::.|        |..:.:.| ||.:.:....|.|..|.|.
  Fly   266 --PTSIFLHLSVVEARAEITGPPIRYLTP--------GSTLRLQCRVVQNTEASEYIFWYHDNRM 320

Mouse   637 IPASL--GVTID-NIDFTSS-LRISNLSLMHNGNYTCIARNEAAA 677
            |...:  |:.:. ..||.|| |.|......|:||:||:|.|...|
  Fly   321 INYDIDRGINVSTEPDFQSSELTIQRTRREHSGNFTCVASNTQPA 365

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dscam	XP_006522949.1	Ig	15..115	CDD:386229
		IGc2	239..300	CDD:197706	5/14 (36%)
		IG	320..400	CDD:214652	11/79 (14%)
		Ig_3	410..488	CDD:372822	17/95 (18%)
		IGc2	518..575	CDD:197706	13/56 (23%)
		Ig	596..686	CDD:386229	27/89 (30%)
		Ig_DSCAM	707..784	CDD:143211
		Ig	802..889	CDD:386229
		FN3	885..978	CDD:238020
		FN3	986..1083	CDD:238020
		FN3	1091..1184	CDD:238020
		FN3	1189..1278	CDD:238020
		Ig_3	1301..1363	CDD:372822
		FN3	1380..1470	CDD:238020
		FN3	1486..1555	CDD:238020
dpr13	NP_001033956.2	V-set	180..276	CDD:284989	25/109 (23%)
		IG_like	182..262	CDD:214653	19/91 (21%)
		IG_like	285..362	CDD:214653	25/84 (30%)
		IGc2	292..361	CDD:197706	23/76 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3510
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900