Protein Alignment Dscam and dpr20

DIOPT Version :9

• Sequence 1: XP_006522949.1
• Gene: Dscam / 13508
• MGIID: 1196281
• Length: 2034
• Species: Mus musculus
• Sequence 2: NP_612066.1
• Gene: dpr20 / 38101
• FlyBaseID: FBgn0035170
• Length: 525
• Species: Drosophila melanogaster
• Alignment Length: 463
• Identity: 84/463 - (18%)
• Similarity: 161/463 - (34%)
• Gaps: 127/463 - (27%)

Mouse   289 GSYVCEVSNRYGTAKVIGRL--------YVKQPLKAT-ISPRKVKSSVGSQVSLSCSVTGNEDQE 344
            ||.:.:....|.:..:|..|        ..|.||:.| .:|....:.:.:|||...|...:.|..
  Fly    51 GSGLVQAKTIYDSVNMIQSLDALVEPRETTKVPLQTTPATPPTAHAHIHNQVSTLRSSYEDSDDG 115

Mouse   345 LSWYRNGEILNP-----------------GKNVRITGLNHANLIMDHMVKSDGGAYQCFVRKDKL 392
            :    :|:.:.|                 |:::....|...:..:......|...::......::
  Fly   116 V----DGDYVIPESQTSTVAILDQDSSMKGQDMESLSLQAGSGTVSPKSSPDSSGHKKNASFQQI 176

Mouse   393 SAQDYVQVV------LEDGTPKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGS 451
            .:|:...:|      ...|.|   |:.:..:.:|.||    ...:.|.|      :.:..:...|
  Fly   177 GSQNVNALVPATVATTSSGLP---SSSNASLATPTEP----ARNRSTGL------VRNSAVKVDS 228

Mouse   452 GHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGP-----ASIRPMK 511
            .|.:|:...::..:::|:..:.|          :||.      :.......||     ..|....
  Fly   229 KHPLSKGQKTDAPMLNYIFDTFS----------SANK------HHHHDQRYGPHFEDVQRIGQAT 277

Mouse   512 NITAIAGRDTYIHCRVIGYPYYSIKWYK---------NANLLPF-------------NHRQVAFE 554
            |:|..||...:::||:......::.|.:         |.|.|..             ...:..:.
  Fly   278 NLTVQAGSSIHLNCRISLLQDKTVSWVRHNTQDEGKDNGNALDLLTVGMHTYTGDKRYKMEFQYP 342

Mouse   555 NNGTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQSVHVTVK----VPPFIQPFEFPRFSIGQRVFI 615
            ||..||:::|:|: ||..|.|.:...|......::||...    |.....|.:...:.|...:.:
  Fly   343 NNWRLKITNVKKD-DEAIYECQISTHPPRVIQINLHVNAPKVMIVDEVGDPLQEKYYEIDSTLQL 406

Mouse   616 PCVVVSGDLPITITWQKDGRPIPASLGVTIDNI---DFT----------------SSLRISNLSL 661
            .|||.:..:..::.:.|.           :|||   |.|                |:|.|:.:|.
  Fly   407 SCVVRNVAMTSSVVFWKH-----------MDNILNYDVTRGGVSVKTELMEDGANSTLSIAKISK 460

Mouse   662 MHNGNYTC 669
            ..:|||||
  Fly   461 TDSGNYTC 468

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dscam	XP_006522949.1	Ig	15..115	CDD:386229
		IGc2	239..300	CDD:197706	2/10 (20%)
		IG	320..400	CDD:214652	12/96 (13%)
		Ig_3	410..488	CDD:372822	12/77 (16%)
		IGc2	518..575	CDD:197706	16/78 (21%)
		Ig	596..686	CDD:386229	20/93 (22%)
		Ig_DSCAM	707..784	CDD:143211
		Ig	802..889	CDD:386229
		FN3	885..978	CDD:238020
		FN3	986..1083	CDD:238020
		FN3	1091..1184	CDD:238020
		FN3	1189..1278	CDD:238020
		Ig_3	1301..1363	CDD:372822
		FN3	1380..1470	CDD:238020
		FN3	1486..1555	CDD:238020
dpr20	NP_612066.1	IG_like	278..365	CDD:214653	20/87 (23%)
		Ig	279..378	CDD:299845	20/99 (20%)
		Ig	400..471	CDD:299845	19/80 (24%)
		IG_like	402..480	CDD:214653	18/78 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3510
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900