DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam and Pvr

DIOPT Version :9

Sequence 1:XP_006522949.1 Gene:Dscam / 13508 MGIID:1196281 Length:2034 Species:Mus musculus
Sequence 2:NP_001162911.1 Gene:Pvr / 34127 FlyBaseID:FBgn0032006 Length:1577 Species:Drosophila melanogaster


Alignment Length:1395 Identity:254/1395 - (18%)
Similarity:427/1395 - (30%) Gaps:467/1395 - (33%)


- Green bases have known domain annotations that are detailed below.


Mouse    92 STLIHD----NTYYCTAENPSG--KIRSQDVHIKAV-----LREPYTVRVEDQKTMRGNVAVFKC 145
            |.:|.|    .|..|..:.|..  ..:||.||:|:.     ...|:...:...:.....||.:.|
  Fly    54 SAIILDAQTSTTLKCEDDEPMSWWTSQSQYVHVKSFDNTEDPARPFGTSLHLIEVTADYVAAYYC 118

Mouse   146 IIPSSVEAYVTVVSWEKDTVSLVSGSRFLITSTGALYIKDVQNE--DGLYNYRCITRHRYT---- 204
            :..|...........::..:.||:..   ..|:..:|:.|...:  |   ::..:|..:||    
  Fly   119 VKTSKFSQIAKEEQSDEAMIELVNQG---YASSIYVYVNDPDTKLVD---SHNVVTARQYTDVVI 177

Mouse   205 -----------------GETRQSNSARLFVSDPAN----SAPSILDGFDHRKAMAGQRVELPCKA 248
                             ||...|.|...:  ||..    ...||:||.|:.           |: 
  Fly   178 PCKPAMPDTEVLLETSNGEMHSSKSVGRY--DPQRGFTIEIRSIVDGGDYY-----------CR- 228

Mouse   249 LGHPEPDYRWLKDNMPLELSGRFQKTVTGLLIENSRP-----------SDSGSYVCEVSNR-YGT 301
               |.|.:...::.| ..:..||  ..|||.|..::.           :|....|..|:|: .|.
  Fly   229 ---PNPPFPHNEEEM-TSIEVRF--IATGLDIPRTQTTNMVYTYAPGVTDGDDEVLTVTNQSTGN 287

Mouse   302 AKVI----GRLYVKQ---------PLKATISPRK-----------VKSSVGSQV------SLSC- 335
            ..:|    |.|..::         |:.|:.|||.           ::|||...|      :|.| 
  Fly   288 LALIRGGDGTLSRERARRSPARLAPMNASPSPRPGQDGKPLPKPVIRSSVEHHVFTDTNFTLDCE 352

Mouse   336 ------SVTGNEDQELSWYRNGEILN------------PGKNVRITGLNHANLIMDHMVKSDGGA 382
                  ||.|.|     |:......|            ...:...||  .:.|.:.:...||.|.
  Fly   353 QSAYVESVYGME-----WFTPSRDENRIFASQSRTDPKTRNSTHQTG--RSTLTVLNAQPSDTGL 410

Mouse   383 YQCFVRKDKLSAQDYVQVVLEDGTPKI-ISAFSEKVVSPAEP-------------VSLVCNVKGT 433
            |:| |..|. |.|:     ::..|.:| :...:|..::..||             :.:..|.:|.
  Fly   411 YKC-VTTDN-SNQN-----VQRATYRIKVLKQNESYLNVGEPSGHYNVQEYANRTIQMTANFEGF 468

Mouse   434 PLPTVTWTLDDDPILKGSGHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQAR 498
            |.|:.:|...|...::.|.:....:.|....::..||   :|::|.|.|....:||.|||..:..
  Fly   469 PTPSFSWFKPDGTEVRQSENNFKILSTELSTMLQVLN---AQLQDSGTYVLRGSNSFGVVQREYN 530

Mouse   499 INVRGPASIRPMKNITAIAGRDTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENNGTLKLSD 563
            ::|....::: |.:.....|....:.|.|..||         ..::.|..|..:.|....     
  Fly   531 VSVMDAPALK-MSDAYVQVGSVARLECTVRSYP---------PAIVTFFFRPCSLEPQWP----- 580

Mouse   564 VQKEVDEGEYTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDLPITI 628
                      ||:||.|                .|..|.|..::                     
  Fly   581 ----------TCSVLNQ----------------NFSLPSEQEKY--------------------- 598

Mouse   629 TWQKDGRPIPASLGVTIDNIDFTSSLRISNLSLM--HNGNYTCIARN-----EAAAVEHQSQLIV 686
              |...||.|..|.|.          ||..:|.:  ..|..||||:|     |...:.....|:.
  Fly   599 --QFQTRPRPGKLSVE----------RIYEVSFLPTEPGILTCIAQNIIDGKERRTLTKAHVLLG 651

Mouse   687 RVPPKFVVQPRDQDGIYGKA--VILNCSAEGYPVP-TIVWKFSKGAGVPQFQPIAL-NGRIQVLS 747
            .:.....:...|:|....|.  |...|.|..|... .:.| |..|..:.:...:.: ....:...
  Fly   652 NISENMTIYGFDKDHKIAKEDNVNFTCEALAYHFDGNLKW-FINGEDLKESDSVHIETSHTKYSY 715

Mouse   748 NGSLLIKHVVEEDSGYYLCKV-SNDVGADV-SKSMYLTVKIPAMITSYPNTTLATQ--------- 801
            ..::.|..:.:.|.|.|.|:. .||..|.. |:.:.|.|..|    |.|..|...|         
  Fly   716 KSTVHITTISDRDRGTYECRAYHNDKDAVYSSREIDLYVHDP----SAPQWTNGGQEGHSKIKRK 776

Mouse   802 -GQRKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKEVGEEVISTLQILPTVREDSGFFSC 865
             .|..|:.|.:......||||.|:|:.:.....|:::. ||      |.|.|......|.|.:.|
  Fly   777 LSQTLELECASTAVPVAIVRWFKDDKEVTESKLRHIIE-KE------SKLLITHLYPGDEGVYKC 834

Mouse   866 HAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWT------------------------ 906
            ...|..........:.:.:.|.             |::.|.                        
  Fly   835 VVENRLDRIERSFTVVISDLPG-------------ISMAWVWFGVILFLILIGLCVFLAVRYQKE 886

Mouse   907 --------------------------MGFDGNSPITGYDIECKNKSDSWDSAQRTKDVSPQLNSA 945
                                      :..|..:.:..|:.|       ::..:....:..||.:.
  Fly   887 HKRHLALKAAGLANFEEGAVGHINPDLTLDEQAELLPYNRE-------FEFPRENLKLGKQLGAG 944

Mouse   946 TIIDIHPSSTYSIRMYAKNRIGKSEPSNEITI-----TADEAAPDGPPQEVHLEPTSSQSIR--- 1002
            ....:.......||        :.||:..:.:     |||.........|:.:.....|.:.   
  Fly   945 AFGVVLKGEAKGIR--------REEPTTTVAVKMVKATADNEVVRALVSELKIMVHLGQHLNVVN 1001

Mouse  1003 ----VTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQ----------FNIISIDTTG-DSEVYT-- 1050
                ||....|:.|...:         ||...||.|          .|.|:.||.. |..:.|  
  Fly  1002 LLGAVTKNIAKRELMVIV---------EYCRFGNIQNFLLRNRKCFINQINPDTDHIDPSIMTQR 1057

Mouse  1051 -LDNLN----------KFTQYGLVVQA----------------------------CNRAGTGPSS 1076
             .||..          |:...|..:.:                            ..|.|:|.::
  Fly  1058 MSDNYELHRDTNGGGLKYANVGFPIHSYINEPHNNNTQPPTHRRNSDNDPRSGTRAGRTGSGTAT 1122

Mouse  1077 QE----------IITTTLED-------------VPSYPPENVQAIATSPESISISWS-------- 1110
            ..          ::||..||             ..:|..::.:|:..:...: |||:        
  Fly  1123 YSYDRQMDTCATVMTTVPEDDQIMSNNSVQPAWRSNYKTDSTEAMTVTTVDL-ISWAFQVARGMD 1186

Mouse  1111 -TLSKEALNGILQGFRVIYWANLIDGELGEIKNVTTTQPSLELDGLEKYTNYSIQV--LAFTRAG 1172
             ..||:.|:|.|....::    |.:..:.:|.:....:.....|..:|..|..:.:  ||.....
  Fly  1187 YLSSKKVLHGDLAARNIL----LCEDNVVKICDFGLARSMYRGDNYKKSENGKLPIKWLALESLS 1247

Mouse  1173 DGVRSE------------QIFTRTKEDVPG 1190
            |.|.|.            ::|:..|...||
  Fly  1248 DHVFSTYSDVWSYGIVLWEMFSLAKVPYPG 1277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DscamXP_006522949.1 Ig 15..115 CDD:386229 7/28 (25%)
IGc2 239..300 CDD:197706 14/72 (19%)
IG 320..400 CDD:214652 26/115 (23%)
Ig_3 410..488 CDD:372822 17/90 (19%)
IGc2 518..575 CDD:197706 8/56 (14%)
Ig 596..686 CDD:386229 20/96 (21%)
Ig_DSCAM 707..784 CDD:143211 17/80 (21%)
Ig 802..889 CDD:386229 20/86 (23%)
FN3 885..978 CDD:238020 12/147 (8%)
FN3 986..1083 CDD:238020 25/165 (15%)
FN3 1091..1184 CDD:238020 20/115 (17%)
FN3 1189..1278 CDD:238020 2/2 (100%)
Ig_3 1301..1363 CDD:372822
FN3 1380..1470 CDD:238020
FN3 1486..1555 CDD:238020
PvrNP_001162911.1 IG 346..432 CDD:214652 22/99 (22%)
Ig <363..432 CDD:299845 17/82 (21%)
Ig 466..533 CDD:299845 18/69 (26%)
IG_like 672..754 CDD:214653 17/82 (21%)
Ig 674..739 CDD:143165 12/65 (18%)
IGc2 779..840 CDD:197706 19/67 (28%)
PKc_like 927..1332 CDD:304357 62/380 (16%)
Pkinase_Tyr 935..1329 CDD:285015 61/365 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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