Protein Alignment Dscam and dpr4

DIOPT Version :9

• Sequence 1: XP_006522949.1
• Gene: Dscam / 13508
• MGIID: 1196281
• Length: 2034
• Species: Mus musculus
• Sequence 2: NP_001014616.2
• Gene: dpr4 / 3346160
• FlyBaseID: FBgn0053512
• Length: 323
• Species: Drosophila melanogaster
• Alignment Length: 267
• Identity: 65/267 - (24%)
• Similarity: 108/267 - (40%)
• Gaps: 54/267 - (20%)

Mouse   312 QPLKATISPRKVKSSVGSQVSLSCSVTGNEDQELSWYRNGE--ILNPG----------KNVRITG 364
            ||.....|.|:|.::||....|.|.|....|:.:||.|..:  ||..|          :::...|
  Fly    44 QPYFDNSSRREVTATVGQAALLHCRVRNLGDRAVSWIRKRDLHILTVGILTYTNDQRFQSLHSEG 108

Mouse   365 LNHANLIMDHMVKSDGGAYQCFVRKD-KLSAQDYVQVVLEDGTPKIISAFSEKVVSPAEPVSLVC 428
            .:...|.:......|.|.|:|.|..: |:|....:.||:  ...||:.. :|..:.....::|.|
  Fly   109 SDEWTLRISSPQPRDSGTYECQVSTEPKISQGFRLNVVV--SRAKILGN-AELFIKSGSDINLTC 170

Mouse   429 NVKGTPLPT--VTWTLDDDPILKGSGHRI---SQ-----MITSEGNVVSYLNISSSQVRDGGVYR 483
            ....:|:|.  :.|.         .|.|:   ||     :||......|.|.|:.:...|.|.|.
  Fly   171 LAMQSPVPPSFIYWY---------KGKRVMNYSQRGGINVITERSTRTSKLLIAKATPADSGNYT 226

Mouse   484 C--TANNSAGVVLYQARINVRGPAS----------IRPMKNITAIAGRDTYIHCRVIGYPYYSIK 536
            |  ::::||.||::.  ||...||:          :||:.:.:......|::...|.     |:.
  Fly   227 CSPSSSDSASVVVHV--INGEHPAAMQHGNSSATCLRPLSSTSVPFVLATWMSMTVA-----SVA 284

Mouse   537 WYKNANL 543
            |..|.|:
  Fly   285 WNSNLNI 291

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dscam	XP_006522949.1	Ig	15..115	CDD:386229
		IGc2	239..300	CDD:197706
		IG	320..400	CDD:214652	23/92 (25%)
		Ig_3	410..488	CDD:372822	19/89 (21%)
		IGc2	518..575	CDD:197706	6/26 (23%)
		Ig	596..686	CDD:386229
		Ig_DSCAM	707..784	CDD:143211
		Ig	802..889	CDD:386229
		FN3	885..978	CDD:238020
		FN3	986..1083	CDD:238020
		FN3	1091..1184	CDD:238020
		FN3	1189..1278	CDD:238020
		Ig_3	1301..1363	CDD:372822
		FN3	1380..1470	CDD:238020
		FN3	1486..1555	CDD:238020
dpr4	NP_001014616.2	V-set	53..146	CDD:284989	23/92 (25%)
		IG_like	53..145	CDD:214653	23/91 (25%)
		ig	153..227	CDD:278476	18/83 (22%)
		IG_like	161..>227	CDD:214653	17/74 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3510
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900