DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam and dpr8

DIOPT Version :9

Sequence 1:XP_006522949.1 Gene:Dscam / 13508 MGIID:1196281 Length:2034 Species:Mus musculus
Sequence 2:NP_001285239.1 Gene:dpr8 / 32387 FlyBaseID:FBgn0052600 Length:344 Species:Drosophila melanogaster


Alignment Length:198 Identity:49/198 - (24%)
Similarity:86/198 - (43%) Gaps:32/198 - (16%)


- Green bases have known domain annotations that are detailed below.


Mouse   327 VGSQVSLSCSVTGNEDQELSWYRNGEI--LNPGK-----NVRITGLN--HA---NLIMDHMVKSD 379
            ||..|.|:|.|....::.:||.|:.:|  |..|:     :.|...::  ||   .|.:.:..:.|
  Fly    56 VGKTVKLTCRVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEAMHSPHAEDWTLRIRYAQRKD 120

Mouse   380 GGAYQCFV-RKDKLSAQDYVQVVLEDGTPKIISAFSEKVVSPAEPVSLVCNVK--GTPLPTVTWT 441
            .|.|:|.: ....:....|:.:|  :....||.. .|..::....::|.|.||  ..|.|||.|:
  Fly   121 SGIYECQISTTPPIGHSVYLNIV
--EPVTDIIGG-PELHINRGSTINLTCIVKFAPEPPPTVIWS 182

Mouse   442 LDDDPILKGSGHRISQMITSEGNV-VSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPA 505
            .:.:.|...|......::|.:|.: .|.|.:..:..:|.|:|.||.:|:             .|.
  Fly   183 HNREIINFDSPRGGISLVTEKGVLTTSRLLVQKAITQDSGLYTCTPSNA-------------NPT 234

Mouse   506 SIR 508
            |:|
  Fly   235 SVR 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DscamXP_006522949.1 Ig 15..115 CDD:386229
IGc2 239..300 CDD:197706
IG 320..400 CDD:214652 21/85 (25%)
Ig_3 410..488 CDD:372822 22/80 (28%)
IGc2 518..575 CDD:197706
Ig 596..686 CDD:386229
Ig_DSCAM 707..784 CDD:143211
Ig 802..889 CDD:386229
FN3 885..978 CDD:238020
FN3 986..1083 CDD:238020
FN3 1091..1184 CDD:238020
FN3 1189..1278 CDD:238020
Ig_3 1301..1363 CDD:372822
FN3 1380..1470 CDD:238020
FN3 1486..1555 CDD:238020
dpr8NP_001285239.1 IG_like 51..131 CDD:214653 20/74 (27%)
V-set 52..143 CDD:284989 21/86 (24%)
IG_like 153..238 CDD:214653 25/98 (26%)
ig 153..232 CDD:278476 22/91 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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