DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam and DIP-kappa

DIOPT Version :9

Sequence 1:XP_006522949.1 Gene:Dscam / 13508 MGIID:1196281 Length:2034 Species:Mus musculus
Sequence 2:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster


Alignment Length:728 Identity:146/728 - (20%)
Similarity:224/728 - (30%) Gaps:269/728 - (36%)


- Green bases have known domain annotations that are detailed below.


Mouse   424 VSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANN 488
            ::::.....|.|.|.|.||.:.| .||...|:....|::              .|...       
  Fly    31 ITIIATAAVTMLMTATPTLAEIP-SKGKHTRLDTQQTAQ--------------EDSDF------- 73

Mouse   489 SAGVVLYQARINVRGPASIRPMKNITAIAGRDTYIHCRVIGYPYYSIKWYK--NANLLPFNHRQV 551
                           |....|:.|:|...|||..:.|.|.....|.:.|.:  ...:|..:|..:
  Fly    74 ---------------PRFAEPIANVTVSVGRDALMACVVENLKGYKVAWVRVDTQTILSIHHNVI 123

Mouse   552 AFENNGTLKLSDVQ---------KEVDEGEYTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRF 607
            :..:..:|..:|.:         :|.|.|.|.|.|...|.  .|:..::.|.|||          
  Fly   124 SQNSRISLTYNDHRSWYLHIKEVEETDRGWYMCQVNTDPM--RSRKGYLQVVVPP---------- 176

Mouse   608 SIGQRVFIPCVVVSGDLPITITWQKDGRPIPASLGVTIDNIDFTSSLRISNLSLMHNGNYTCIAR 672
                      ::|.|                           .||                    
  Fly   177 ----------IIVEG---------------------------LTS-------------------- 184

Mouse   673 NEAAAVEHQSQLIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPI 737
                     :.::||               .|:.:.|.|.|.|||.|.::|:...|      :.:
  Fly   185 ---------NDMVVR---------------EGQNISLVCKARGYPEPYVMWRREDG------EEM 219

Mouse   738 ALNGRIQVLSNGSLL-IKHVVEEDSGYYLCKVSNDVGADVSKSMYLTVKIPAMITSYPNTTL-AT 800
            .:.|....:.:|.|| |..|.......|||..||.|...:||.::|.|:.|.|: |.||... |.
  Fly   220 LIGGEHVNVVDGELLHITKVSRLHMAAYLCVASNGVPPSISKRVHLRVQFPPML-SIPNQLEGAY 283

Mouse   801 QGQRKEMSCTAHGEKPIIVRW--EKEDRIINPEMARYLVSTKEVGE--EVIST---------LQI 852
            .||...:.|........|..|  |:.|.||:        .|...|:  |..||         |:|
  Fly   284 LGQDVILECHTEAYPASINYWTTERGDMIIS--------DTSRAGDKYETTSTVSGYTKYMKLKI 340

Mouse   853 LPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITL----RWTMGFDGNS 913
            ......|.|.:.|.|.||.||..|.|:|  .|.|.|....|.::.....:.    |....||..:
  Fly   341 RAVGPNDFGTYRCVAKNSLGETDGNIKL--DEMPTPTTAIISEMSLLNRSYDGKRRHRNKFDSAN 403

Mouse   914 PITGYDIECKNKSDSW-DSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNEITI 977
            .:..|.:|      .| |.||                             .|..|.:..:|:..:
  Fly   404 ALPDYGVE------EWRDGAQ-----------------------------GNNAGNNGDNNQTPV 433

Mouse   978 TADEAAPDGPPQEVHLEPTSSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISIDT 1042
            .       .||...|   .|:.|:          .|:.::....:|.:..|.|            
  Fly   434 R-------NPPGAFH---NSAGSL----------AQHNLLAKIMLGIKTQSFG------------ 466

Mouse  1043 TGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPS-YPPENVQAIATSPESI- 1105
                       :.|.....|.:.|      |.|...:.|.:|...|| :...||:....|||:: 
  Fly   467 -----------IFKRLSSSLPLAA------GQSFLWLSTLSLVSAPSRWRMSNVENRPNSPETVV 514

Mouse  1106 -----SISWSTLS 1113
                 :..|.|.|
  Fly   515 NNDTAAECWETRS 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DscamXP_006522949.1 Ig 15..115 CDD:386229
IGc2 239..300 CDD:197706
IG 320..400 CDD:214652
Ig_3 410..488 CDD:372822 12/63 (19%)
IGc2 518..575 CDD:197706 15/67 (22%)
Ig 596..686 CDD:386229 6/89 (7%)
Ig_DSCAM 707..784 CDD:143211 24/77 (31%)
Ig 802..889 CDD:386229 29/99 (29%)
FN3 885..978 CDD:238020 15/97 (15%)
FN3 986..1083 CDD:238020 15/96 (16%)
FN3 1091..1184 CDD:238020 8/29 (28%)
FN3 1189..1278 CDD:238020
Ig_3 1301..1363 CDD:372822
FN3 1380..1470 CDD:238020
FN3 1486..1555 CDD:238020
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 21/93 (23%)
IG_like 82..174 CDD:214653 22/93 (24%)
IG_like 184..267 CDD:214653 28/132 (21%)
IGc2 191..255 CDD:197706 21/69 (30%)
IG_like 282..368 CDD:214653 27/93 (29%)
Ig 288..367 CDD:143165 23/86 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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