DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam and sdk

DIOPT Version :10

Sequence 1:XP_006522949.1 Gene:Dscam / 13508 MGIID:1196281 Length:2034 Species:Mus musculus
Sequence 2:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster


Alignment Length:2449 Identity:546/2449 - (22%)
Similarity:881/2449 - (35%) Gaps:699/2449 - (28%)


- Green bases have known domain annotations that are detailed below.


Mouse    26 FVNASLQE---------------VVFASTSGTLV--------PCPAAGIPPVTLRWYLATGEEIY 67
            :.:|:||:               ....|:||::|        .|.|.|.|..|.|| |..|..:.
  Fly    52 YADANLQQQNSIVQQQQLQAPRFTTHPSSSGSIVSEGSTKILQCHALGYPQPTYRW-LKDGVPVG 115

Mouse    68 DVPGIRHVHPNGTLQIFPFPPSSF----STLIHD-NTYYCTAENPSGKIRSQDVHIKAVLREPYT 127
            |                 |..|.|    ||...| .:|.|.|.|.:|.|.|:...:.......:.
  Fly   116 D-----------------FSSSQFYRFHSTRREDAGSYQCIARNDAGSIFSEKSDVVVAYMGIFE 163

Mouse   128 VRVEDQKT-MRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLVSGSRFLITSTGALYIKDVQNEDG 191
            ...|.:.| :.|:.|:|.  :|......|..|.|:.:...|....::..|....|.|... :|:.
  Fly   164 NTTEGRLTVISGHPAIFD--MPPIESIPVPSVMWQSEDGPLNYDIKYAFTHANQLIILSA-DEND 225

Mouse   192 LYNYRCITRHRYTGETRQSNSARLFVS-DP-ANSAPSILDGFDHRKAMAGQR-VELPCKALGHP- 252
            ...||....:...|:...|....|.|| || ...||.|:......|...|.. |||.|.|...| 
  Fly   226 RKGYRAKAINTQLGKEESSAFVHLNVSGDPYIEVAPEIIVRPQDVKVKVGTGVVELQCIANARPL 290

Mouse   253 -EPDYRWLKDNMPLELSG-------RFQKTVTGLLIENSRPSDSGSYVCEV---SNRYGTAKVIG 306
             |.:..||||.:.:|.:|       .:.:|: .||..||  |.||.|.|:|   |..|.......
  Fly   291 HELETLWLKDGLAVETAGVRHTLNDPWNRTL-ALLQANS--SHSGEYTCQVRLRSGGYPAVSASA 352

Mouse   307 RLYVKQPLKATISPRKVKS--SVGSQVSLSCSVTGNEDQELSWYRNGEILNPG-KNVRITGLNHA 368
            ||.:.:| ....:|.:.::  ..|.||.|:|.|.|....::.|:||.|.::.. ::.|.| ||..
  Fly   353 RLQILEP-PLFFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYT-LNTD 415

Mouse   369 N-LIMDHMVKSDGGAYQCFVRKD--KLSAQDYVQV--------VLEDGTPKIISA---------- 412
            | |::..::..|...:||....:  :.||..:::|        |.....|:|:..          
  Fly   416 NTLVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSE 480

Mouse   413 ---------------FSEKVVSPAEP----------VSLVCNVKGTPLPTVTWTLDDDPILKGSG 452
                           |:...:....|          .::.|...|:|.|.:||..::..::..|.
  Fly   481 KGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWIYNETQLVDISS 545

Mouse   453 HRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPAS-IRPMKNITAI 516
             |:  .|...|:::    ||:.:..|.|:|.|...|.||.|..:|.::|..... |:|..:.|.:
  Fly   546 -RV--QILESGDLL----ISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVL 603

Mouse   517 AGRDTYIHCRVIGYPY--YSIKWYKNA-NLLPF-NHRQVAFENNGTLKLSDVQKEVDEGEYTCNV 577
            .|....:.|:|...|.  |:|.||:.. :..|. |.:::..:.:|.|::..|:.. |.|.|.| |
  Fly   604 LGLTATLQCKVSSDPSVPYNIDWYREGQSSTPISNSQRIGVQADGQLEIQAVRAS-DVGSYAC-V 666

Mouse   578 LVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDLP------ITITWQK--DG 634
            :..|..:.:::..::|        .|.|        |.|..|....||      |.::|..  ||
  Fly   667 VTSPGGNETRAARLSV--------IELP--------FPPSNVKVERLPEPQQRSINVSWTPGFDG 715

Mouse   635 R-----------------PIPASLGVTIDNIDFTSSLRISNLS------LMHNGNYTCIARNEAA 676
            .                 |:|..|      :::.:.|  ||:|      |:.|.....:.:...:
  Fly   716 NSPISKFIIQRREVSELGPVPDPL------LNWITEL--SNVSADQRWILLENLKAATVYQFRVS 772

Mouse   677 AVEHQSQLIVRVPPKFVVQPRDQD-----GIYGKA------------------------VILNCS 712
            ||....:.....|...|..|::..     |..|.|                        .||...
  Fly   773 AVNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYR 837

Mouse   713 AEGY-PVP------------------TIVWK----------------FSKGA------GVPQFQP 736
            ..|| .||                  .|.||                :::|:      |||:..|
  Fly   838 LFGYNNVPWSYQNITNEAQRNFLIQELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPP 902

Mouse   737 I----------------------ALNG-----RIQV----LSNG--------------SLL---- 752
            .                      .:||     :||.    |.:|              ||:    
  Fly   903 TNVKVEAINSTAARCRWTPPNPQQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLA 967

Mouse   753 ----IKHVVEEDSGY---YLCKVSNDVGADVSKSMYLTV-KIPAMITSYPNTTLATQGQRKEMSC 809
                |...:|:.:.|   .||......|...|:...:|: .:|..:|......::.:.. |.:..
  Fly   968 EQTAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSV-KVLWA 1031

Mouse   810 TAHGEKPII----VRWEKEDRIINPEMARYLVSTKEVGEEVISTLQ--------ILPTVREDSGF 862
            .......|:    ||::.:||   |:..:....|.:..|..::.||        |:...|..||.
  Fly  1032 PPRASNGILTGYTVRYQVKDR---PDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGI 1093

Mouse   863 FSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGNSPITGYDIECKN-KS 926
            .....|.|     |:..:.   |..|..:.:.:::|.::.|::|.||||||.||.:.:|.:. ::
  Fly  1094 PKTATIQS-----GVEPVL---PHAPTALALSNIEAFSVVLQFTPGFDGNSSITKWKVEGQTARN 1150

Mouse   927 DSWDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNEITITAD----EAAPDGP 987
            .:|.:.....|  |...:.|:..:.|.:.|.:|:.|.|.:|.|:||.   .|.|    :|.|..|
  Fly  1151 MTWFTICEIND--PDAETLTVTGLVPFTQYRLRLSASNVVGSSKPSE---ATKDFQTIQARPKHP 1210

Mouse   988 PQEVHLEPTSSQSIRVTWKAPKKHLQNGIIRGYQIGYRE-YSTGGNFQF---NIISIDTTGDSEV 1048
            |..|.:...|:|.:||.|...::....|..|||.|.|:: ..|.|..::   :::..|.|.:|.|
  Fly  1211 PFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRGYNISYKQLVKTPGTIKYVPRSVVIEDHTANSHV 1275

Mouse  1049 YTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPESISISWSTLS 1113
              ||:|.::|.|.:.:.|||..|....|...:..|.|.||||.|.:|||.|||..::.:.|..:.
  Fly  1276 --LDSLEEWTLYEVKMNACNDVGCSKESDTAVERTREAVPSYGPLDVQANATSSTTVVVQWGEVP 1338

Mouse  1114 KEALNGILQGFRVIYWA-----NLIDGELGEIKNVTTTQPSLELDGLEKYTNYSIQVLAFTRAGD 1173
            ::..||.:.|::|.|.|     .::...:......|||     |..|:||..|.:||||:||.|:
  Fly  1339 RQHRNGQIDGYKVFYAAADRGQQVLHKTIPNNATFTTT-----LTELKKYVVYHVQVLAYTRLGN 1398

Mouse  1174 GVRS-EQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVFCSHPYPTVISEF 1237
            |..| ..|..:|.||.||.|:.|.....|.:|..:.|..|:..||.|..|.|             
  Fly  1399 GALSTPPIRVQTFEDTPGVPSNVSFPDVSLTMARIIWDVPVDPNGKILAYQV------------- 1450

Mouse  1238 EASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPARILTFSGTVTTPWMKD 1302
                   :|.: |.|....||                       .:.|....||..|.       
  Fly  1451 -------TYTL-NGSAMLNYS-----------------------REFPPSDRTFRATE------- 1477

Mouse  1303 IVLPCKAVGDPSPAVKWMKDSNGTPSLVTIDGRRSIFSNGSFIIRTVKAEDSGYY--SCVANN-- 1363
             :||.|                                               ||  ||.|..  
  Fly  1478 -LLPGK-----------------------------------------------YYSFSCTAQTRL 1494

Mouse  1364 NWGSDEIIL-----NLQVQVPPDQPRLTVSKTTSSSITLSWLPGDNGGSSIRGYILQYSEDNSEQ 1423
            .||.....|     |.:....|..|:::.|:..:..||.||.||.:|.:.:|.|.::..| |..:
  Fly  1495 GWGKIATALVYTTNNRERPQAPSVPQISRSQIQAHQITFSWTPGRDGFAPLRYYTVEMRE-NEGR 1558

Mouse  1424 WGSFP--ISPSERSYRLENLKCGTWYKFTLTAQNGVGPGRIS-EIIEAKTLGKEPQFSKEQELFA 1485
            |...|  :.||..|:....|:....|:|.:.|.|.:||...| |.:..:||...|..........
  Fly  1559 WQPLPERVDPSLSSFTAVGLRPYMTYQFRIQATNDLGPSAFSRESVIVRTLPAAPAVGVGGLKVV 1623

Mouse  1486 SINTTRVR-----LNLIGWNDGGCPITSFTLEYR---PFGTTVWTTAQRTSL----SKSYILYDL 1538
            .|.||.||     |....|| |......:.:.|:   .|.|.:.:| .:|.:    ..|.:|.||
  Fly  1624 PITTTSVRVQWSALETALWN-GDASTGGYRILYQQLSDFPTALQST-PKTDVHGINENSVVLSDL 1686

Mouse  1539 QEATWYELQMRVCNSAGCAEKQANFATLNYDGSTIP----------PLIKSVVQ-----SEEGLT 1588
            |:...||:.:...||.|........|.  |.|..:|          |:..:.|:     .::.:.
  Fly  1687 QQDRNYEIVVLPFNSQGPGPATPPAAV--YVGEAVPTGEPRAVDAAPISSTEVRLLWKPPKQSMQ 1749

Mouse  1589 TNE--GLKI--LVTIS--CILVGVLLLFVLLLVVRRRRREQRLKRL-RDAKSLAEMLMSKNTR-- 1644
            ..:  |.||  |||.|  .:..|             |:.|:.::.: ..|.|.:.:.:.|.|.  
  Fly  1750 NGDILGYKIYYLVTYSPQALEPG-------------RKWEEEIEVVSATATSHSLVFLDKFTEYR 1801

Mouse  1645 --------TSDTLSKQQQTLRMHIDIPRAQLLIEERD-TMETID-----------DRSTVLLT-- 1687
                    ..|.......|::....:|.|.|.:...| ||::::           :....|:|  
  Fly  1802 IQLLAFNPAGDGPRSAPITVKTLPGVPSAPLHLRFSDITMQSLEVTWDPPKFLNGEILGYLVTYE 1866

Mouse  1688 ----DADFGEAAKQK-------------SLTVTHTVHYQ---------SVSQATGPLVDVSDARP 1726
                :..|.:..|||             .:|.|.||..|         |.:..||| .|.|...|
  Fly  1867 TTEENEKFSKQVKQKVSNTTLRVQNLEEEVTYTFTVRAQTSVDYGPGISENVTTGP-QDGSPVAP 1930

Mouse  1727 GTNPTTRRNAKA------GPT-----------ARNRYASQWT-LNRPHP------TISAHTLTTD 1767
            .....|:..:..      ||:           |:.|..|:|| :.:...      |:|.|.|   
  Fly  1931 RDLILTKTLSSVEMHWINGPSGRGPILGYLIEAKKRDDSRWTKIEQTRKGMMQDFTVSYHIL--- 1992

Mouse  1768 WRLPTPRATGSVDKESDSYSVS-PSQDTDRARSSMVSTESASSTYEELARAYEHAKMEEQLRHAK 1831
              :|:...|..| ...:.|.:| |           |.::.:..|..:|...|.:      |:|..
  Fly  1993 --MPSTAYTFRV-IAYNRYGISFP-----------VYSKDSILTPSKLHLEYGY------LQHKP 2037

Mouse  1832 FTITECFISDTSSEQLTAGTNEYTDSLTSSTPSESGICRFTASPPKPQDGGRVV--NMAVPKAHR 1894
            |.....|:...::           .|:.......:.:|..:.|....|:..:.:  :||:....|
  Fly  2038 FYRQTWFMVSLAA-----------TSIVIIVMVIAVLCVKSKSYKYKQEAQKTLEESMAMSIDER 2091

Mouse  1895 PVLETRSSKSRHQLTHVPLRALGDLIHLPPYLRMDFLLNRGAPGTSR---DLSLGQA-------- 1948
            ..|.....:|||.:....|.::|.       ||...|...|...|||   .:.||::        
  Fly  2092 QELALELYRSRHGVGTGTLNSVGT-------LRSGTLGTLGRKSTSRPPPGVHLGKSPPRPSPAS 2149

Mouse  1949 -----------CLE--PQKSRTLKRPTVLEPTPMEASSSTSSTREG------------------- 1981
                       |.:  |..|...::|:  |.:..|||..:.|..|.                   
  Fly  2150 VAYHSDEESLKCYDENPDDSSVTEKPS--EVSSSEASQHSESENESVRSDPHSFVNHYANVNDSL 2212

Mouse  1982 QQSWQQGAVATLPQREGAELGQAAKMSSSQESLLDSRGHLKGNN 2025
            :|||::    |.|.|..:....:....|:..||  :.|.:..||
  Fly  2213 RQSWKK----TKPVRNYSSYTDSEPEGSAVMSL--NGGQIIVNN 2250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DscamXP_006522949.1 Ig 26..121 CDD:472250 30/122 (25%)
Ig strand B 42..46 CDD:409547 1/11 (9%)
Ig strand C 55..59 CDD:409547 2/3 (67%)
Ig strand E 79..83 CDD:409547 0/3 (0%)
Ig strand F 99..104 CDD:409547 2/4 (50%)
Ig strand G 112..116 CDD:409547 1/3 (33%)
Ig 125..210 CDD:472250 17/85 (20%)
Ig strand B 141..145 CDD:409353 2/3 (67%)
Ig strand C 157..161 CDD:409353 1/3 (33%)
Ig strand E 179..183 CDD:409353 1/3 (33%)
Ig strand F 192..199 CDD:409353 2/6 (33%)
Ig 235..310 CDD:472250 30/87 (34%)
Ig strand B 242..246 CDD:409353 3/3 (100%)
Ig strand C 255..259 CDD:409353 0/3 (0%)
Ig strand F 290..295 CDD:409353 2/4 (50%)
Ig 313..395 CDD:472250 23/87 (26%)
Ig strand B 331..335 CDD:409353 2/3 (67%)
Ig strand C 344..348 CDD:409353 0/3 (0%)
Ig strand E 368..372 CDD:409353 2/4 (50%)
Ig strand F 382..387 CDD:409353 2/4 (50%)
Ig 406..501 CDD:472250 25/129 (19%)
Ig strand B 424..428 CDD:409353 0/3 (0%)
Ig strand C 437..441 CDD:409353 1/3 (33%)
Ig strand E 467..471 CDD:409353 0/3 (0%)
Ig strand F 481..486 CDD:409353 2/4 (50%)
Ig strand G 494..497 CDD:409353 0/2 (0%)
Ig 504..593 CDD:472250 22/93 (24%)
Ig strand B 521..525 CDD:409353 0/3 (0%)
Ig strand C 534..538 CDD:409353 1/3 (33%)
Ig strand E 557..561 CDD:409353 2/3 (67%)
Ig strand F 572..577 CDD:409353 2/4 (50%)
Ig strand G 586..589 CDD:409353 0/2 (0%)
Ig 596..686 CDD:472250 22/120 (18%)
Ig strand B 613..617 CDD:409353 1/3 (33%)
Ig strand C 627..631 CDD:409353 0/3 (0%)
Ig strand E 652..656 CDD:409353 1/3 (33%)
Ig strand F 666..671 CDD:409353 0/4 (0%)
Ig strand G 679..682 CDD:409353 0/2 (0%)
Ig_DSCAM 689..784 CDD:409397 35/220 (16%)
putative Ig strand A 689..693 CDD:409397 1/3 (33%)
putative Ig strand A' 698..702 CDD:409397 0/8 (0%)
putative Ig strand B 704..714 CDD:409397 4/33 (12%)
putative Ig strand C 720..726 CDD:409397 3/21 (14%)
putative Ig strand C' 733..736 CDD:409397 0/2 (0%)
putative Ig strand D 744..747 CDD:409397 1/6 (17%)
putative Ig strand E 749..755 CDD:409397 4/27 (15%)
putative Ig strand F 762..770 CDD:409397 3/10 (30%)
putative Ig strand G 775..784 CDD:409397 1/8 (13%)
Ig_DSCAM 785..884 CDD:409398 20/110 (18%)
putative Ig strand A 785..788 CDD:409398 0/2 (0%)
putative Ig strand A' 796..800 CDD:409398 0/3 (0%)
putative Ig strand B 803..810 CDD:409398 1/6 (17%)
putative Ig strand C 818..824 CDD:409398 2/9 (22%)
putative Ig strand C' 833..836 CDD:409398 0/2 (0%)
putative Ig strand D 842..846 CDD:409398 1/3 (33%)
putative Ig strand E 848..854 CDD:409398 3/13 (23%)
putative Ig strand F 861..869 CDD:409398 1/7 (14%)
putative Ig strand G 872..882 CDD:409398 1/9 (11%)
FN3 885..978 CDD:238020 27/93 (29%)
FN3 <937..1300 CDD:442628 109/376 (29%)
Ig_3 1287..1363 CDD:464046 11/77 (14%)
FN3 1380..1470 CDD:238020 28/92 (30%)
FN3 1486..1555 CDD:238020 23/80 (29%)
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 23/87 (26%)
Ig 280..344 CDD:409353 24/66 (36%)
Ig strand B 280..283 CDD:409353 2/2 (100%)
Ig strand C 292..298 CDD:409353 1/5 (20%)
Ig strand E 319..323 CDD:409353 1/4 (25%)
Ig strand F 333..338 CDD:409353 2/4 (50%)
Ig 360..451 CDD:472250 23/91 (25%)
Ig strand B 378..382 CDD:409353 2/3 (67%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 2/3 (67%)
Ig strand F 430..435 CDD:409353 2/4 (50%)
Ig strand G 443..446 CDD:409353 2/2 (100%)
Ig 502..587 CDD:472250 22/91 (24%)
Ig strand B 517..521 CDD:409353 0/3 (0%)
Ig strand C 530..534 CDD:409353 1/3 (33%)
Ig strand E 554..557 CDD:409353 0/6 (0%)
Ig strand F 567..572 CDD:409353 2/4 (50%)
Ig strand G 580..583 CDD:409353 0/2 (0%)
Ig 592..682 CDD:472250 22/91 (24%)
Ig strand B 608..612 CDD:409353 0/3 (0%)
Ig strand C 623..627 CDD:409353 1/3 (33%)
Ig strand E 648..652 CDD:409353 2/3 (67%)
Ig strand F 662..667 CDD:409353 2/5 (40%)
Ig strand G 675..678 CDD:409353 0/2 (0%)
FN3 686..789 CDD:238020 22/118 (19%)
FN3 798..893 CDD:238020 13/94 (14%)
FN3 901..1005 CDD:238020 16/103 (16%)
FN3 <960..>1261 CDD:442628 77/317 (24%)
fn3 1317..1402 CDD:394996 30/89 (34%)
FN3 1415..1507 CDD:238020 33/190 (17%)
FN3 1513..1608 CDD:238020 28/95 (29%)
FN3 1583..>2011 CDD:442628 97/451 (22%)

Return to query results.
Submit another query.