DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arid3a and osa

DIOPT Version :9

Sequence 1:NP_001275554.1 Gene:Arid3a / 13496 MGIID:1328360 Length:601 Species:Mus musculus
Sequence 2:NP_001163639.1 Gene:osa / 42130 FlyBaseID:FBgn0261885 Length:2716 Species:Drosophila melanogaster


Alignment Length:643 Identity:148/643 - (23%)
Similarity:213/643 - (33%) Gaps:214/643 - (33%)


- Green bases have known domain annotations that are detailed below.


Mouse    28 PP----PPPEPTGVRARTTMTDEDREPENARMHRTQMAALAAMRAAAAGLGHPSSPGGSEDGPPI 88
            ||    ||..||.:...|:      .|..::|.:.               |.|...|.| .||..
  Fly   809 PPHHMGPPHGPTNMGPPTS------TPPQSQMLQG---------------GQPQGQGAS-GGPES 851

Mouse    89 SGDEDTAREGTLSSPALHGSVLEGAGHAEGDRHLMDVGSDDDDTKSKWEEQELEEL-------GE 146
            .|.|..:::..:||        .|...|.|...:..|.:...|..|..|..:...|       ||
  Fly   852 GGPEHISQDNGISS--------SGPTGAAGMHAVTSVVTTGPDGTSMDEVSQQSTLSNASAASGE 908

Mouse   147 EEE----EEEEEDDFEEEEEEEEGLGPPESASLGTAGLFTRKAPPAQAFRGDGGP----RMLSGP 203
            :.:    :..:.|.:.:..     |.||.:            :|........|||    .|.|.|
  Fly   909 DPQCTTPKSRKNDPYSQSH-----LAPPST------------SPHPVVMHPGGGPGEEYDMSSPP 956

Mouse   204 ERLGPGPAHPSHMASQMPPPDHGDWTFEEQFK-------------QLYELDADPKRKEFLDDLFS 255
            .  .|.||....:.:.:|.|       :|.|:             :|||:|.:|.|:.:||.|.:
  Fly   957 N--WPRPAGSPQVFNHVPVP-------QEPFRSTITTTKKSDSLCKLYEMDDNPDRRGWLDKLRA 1012

Mouse   256 FMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLR 320
            ||::|.||:...|.::||.|||:.||:.|.|:||.|||...|.|::|...|.:..| :|||:|||
  Fly  1013 FMEERRTPITACPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLGIGAS-SSAAYTLR 1076

Mouse   321 TQYMKYLYPYECE-RRGLSSPNELQAAIDSNRREGRRQSFGGSLFAYSPSGAHSMLPSPKLPVTP 384
            ..|.|.|..:||. .||...|..:...:::    |.::....:....||.|.|       |....
  Fly  1077 KHYTKNLLTFECHFDRGDIDPLPIIQQVEA----GSKKKTAKAASVPSPGGGH-------LDAGT 1130

Mouse   385 LGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLP-VSLAGHPVVAAQAAAVQAAAAQA--AVAA 446
            .....|:|.....|||              ||..| .::.|:|.....:....|:..|.  |.|.
  Fly  1131 TNSTGSSNSQDSFPAP--------------PGSAPNAAIDGYPGYPGGSPYPVASGPQPDYATAG 1181

Mouse   447 QAAALEQLREKLESTEPPEKKMALVADEQQRLMQRAVQQSFLAMTAQLPMNIRINSQASESRQDS 511
            |                               |||...|:              |.|.......:
  Fly  1182 Q-------------------------------MQRPPSQN--------------NPQTPHPGAAA 1201

Mouse   512 AVSLTSANGSN-SISMSVEMNGIVYTGVLFAQPPPPTAPSAPGKGGVSSIGTNTTTGSRTGASGS 575
            ||    |.|.| |:|...|              .|..|...||.|.....|.....|:.:|.:|:
  Fly  1202 AV----AAGDNISVSNPFE--------------DPIAAGGGPGSGTGPGPGQGPGPGAASGGAGA 1248

Mouse   576 --TVSGG------------------------------QVGLPGVSTPTMSSTSNNSLP 601
              .|.||                              ..||||...|..........|
  Fly  1249 VGAVGGGPQPHPPPPHSPHTAAQQAAGQHQQQHPQHQHPGLPGPPPPQQQQGQQGQQP 1306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arid3aNP_001275554.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..224 44/214 (21%)
Acidic 128..165 7/47 (15%)
ARID_ARID3A 224..356 CDD:350642 51/145 (35%)
Important for nuclear localization 450..493 4/42 (10%)
Homodimerization. /evidence=ECO:0000250 495..518 4/22 (18%)
Important for cytoplasmic localization 542..562 5/19 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 545..601 17/87 (20%)
osaNP_001163639.1 BRIGHT 1001..1092 CDD:128777 41/91 (45%)
DUF3518 2191..2451 CDD:288854
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.900

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