DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dlk1 and crb

DIOPT Version :10

Sequence 1:NP_034182.2 Gene:Dlk1 / 13386 MGIID:94900 Length:385 Species:Mus musculus
Sequence 2:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster


Alignment Length:297 Identity:84/297 - (28%)
Similarity:119/297 - (40%) Gaps:89/297 - (29%)


- Green bases have known domain annotations that are detailed below.


Mouse    23 GAEC-DPPCDPQYGFCEADNVCRCHVGWEGPLC----DKCVTAPG-CVNGVCK------------ 69
            |.|| |.|        ..|..|:|..||.|..|    |:|...|. |.||:||            
  Fly   726 GGECVDLP--------NGDYECKCTRGWTGRTCGNDVDECTLHPKICGNGICKNEKGSYKCYCTP 782

Mouse    70 -----------------------------EPWQCICKDGWDGKFCEIDVRACTSTPCANNGTCVD 105
                                         ..::|:|:.|::|:.||:|:..|.|.||:|..||:|
  Fly   783 GFTGVHCDSDVDECLSFPCLNGATCHNKINAYECVCQPGYEGENCEVDIDECGSNPCSNGSTCID 847

Mouse   106 LEKGQYECSCTPGFSGKDCQHKAGPCVINGSPCQHGGACVDDEGQASHASCLCP-PGFSGNFCEI 169
             ....:.|:|.||.:|:.|......||  |.||.:||.|:|   |.....|.|. .|:.|..||:
  Fly   848 -RINNFTCNCIPGMTGRICDIDIDDCV--GDPCLNGGQCID---QLGGFRCDCSGTGYEGENCEL 906

Mouse   170 VAATNSCTPNPCENDGVCTDIGGDFRCRCPAGFVDKTCSRPVSNCASGPCQNGGTCLQHTQVS-- 232
              ..:.|..|||.|...|.|...|:.|.|..|:..|.|.:.::.|.|.|||..|.||:.:.::  
  Fly   907 --NIDECLSNPCTNGAKCLDRVKDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNITLY 969

Mouse   233 -----------------------FECLCKPPFMGPTC 246
                                   :||:|.|..:|..|
  Fly   970 QMSRITDLPKVFSQPFSFENASGYECVCVPGIIGKNC 1006

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dlk1NP_034182.2 EGF_CA 88..125 CDD:238011 14/36 (39%)
EGF_CA 135..168 CDD:238011 12/33 (36%)
EGF_CA 177..207 CDD:238011 11/29 (38%)
EGF_CA 214..246 CDD:238011 13/56 (23%)
crbNP_001247284.1 LamG 91..228 CDD:238058
EGF 269..299 CDD:394967
EGF_CA <311..341 CDD:238011
EGF_CA 386..423 CDD:238011
EGF_CA 425..460 CDD:238011
EGF 466..495 CDD:394967
EGF 605..633 CDD:394967
EGF_CA 716..750 CDD:238011 11/31 (35%)
EGF_CA 753..789 CDD:238011 8/35 (23%)
EGF_CA 792..828 CDD:238011 4/35 (11%)
EGF_CA 830..865 CDD:238011 14/35 (40%)
EGF_CA 868..905 CDD:238011 14/41 (34%)
EGF_CA 907..943 CDD:238011 12/35 (34%)
EGF_CA 1009..1045 CDD:238011
EGF_CA 1047..1082 CDD:238011
Laminin_G_1 1155..1290 CDD:395008
EGF 1316..1346 CDD:394967
Laminin_G_1 1388..1550 CDD:395008
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:460494
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
Blue background indicates that the domain is not in the aligned region.

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