DRSC/TRiP Functional Genomics Resources

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Protein Alignment COX6A1 and cox6a1

DIOPT Version :10

Sequence 1:NP_004364.2 Gene:COX6A1 / 1337 HGNCID:2277 Length:109 Species:Homo sapiens
Sequence 2:NP_001016543.1 Gene:cox6a1 / 549297 XenbaseID:XB-GENE-855918 Length:111 Species:Xenopus tropicalis


Alignment Length:221 Identity:44/221 - (19%)
Similarity:79/221 - (35%) Gaps:62/221 - (28%)


- Green bases have known domain annotations that are detailed below.


Human   103 EQLTMFCKE-----------DDVVTCKACNKSPEHGAHSVVPIKDVAWEYKWKLQQALEHLRKEQ 156
            ||...|.||           |..|.|.....||.  .||:.|: |:         :.::||.|..
 Frog   539 EQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPT--GHSLRPL-DL---------EFMKHLSKVV 591

Human   157 E---KVWKLEVSEKEQAAIWKTQMETRKQSILWEFEKYQQL-----LKEKELPCQQAEEEAAAVQ 213
            .   .:.|.:....|:.:.:|.::  ||:..:...|.|.|.     |::|....:..:|......
 Frog   592 NIIPVIAKADTMTLEEKSEFKQRV--RKELEVNGIEFYPQKEFDEDLEDKTENDKIRQESMPFAV 654

Human   214 AGLEQEKGEMGNKLRLRHEKMIQQSQVLWQMIVELEERSQRP--------VRWMMQGIQEALNSL 270
            .|.::|....|        |.:...:..|. |:|:|..:...        :|..:|.::|..:::
 Frog   655 VGSDKEYQVNG--------KRVLGRKTPWG-IIEVENLNHCEFALLRDFVIRTHLQDLKEVTHNI 710

Human   271 ------------KPAVPPLLCWTGES 284
                        ...:||:...|.||
 Frog   711 HYETYRAKRLNDNGGLPPVSVDTEES 736

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COX6A1NP_004364.2 Cyt_c_Oxidase_VIa 22..107 CDD:238465 2/3 (67%)
cox6a1NP_001016543.1 Cyt_c_Oxidase_VIa 24..107 CDD:238465
Blue background indicates that the domain is not in the aligned region.

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