Protein Alignment PABPC4L and pabpc1l

DIOPT Version :9

• Sequence 1: NP_001108206.3
• Gene: PABPC4L / 132430
• HGNCID: 31955
• Length: 370
• Species: Homo sapiens
• Sequence 2: NP_001005062.1
• Gene: pabpc1l / 448615
• XenbaseID: XB-GENE-5742459
• Length: 629
• Species: Xenopus tropicalis
• Alignment Length: 370
• Identity: 246/370 - (66%)
• Similarity: 308/370 - (83%)
• Gaps: 1/370 - (0%)

Human     1 MN-VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 64
            || ..|.|.:|||||||||.||||.:|:.|||..||::|||:|||..|||||||||:||.|.|||
 Frog     1 MNATGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADA 65

Human    65 QKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
            ::|||||||::|||:.||:||||||..||:||:|||||||||:|||||.||:.|||||.|||.||
 Frog    66 ERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130

Human   130 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYI 194
            :.|:.||:||.||||:.|.||:|||:.|||.||...|||||.||:|::||.|..:|..|||||||
 Frog   131 VCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYI 195

Human   195 KNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQL 259
            ||||.||||:||:::||.:|.|||||||.|.:|:|:|||||::.:||.|:|||.||||:::||::
 Frog   196 KNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRM 260

Human   260 IFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKV 324
            |:||||||::|||.|||:.|||:|:|||...|||.||:|||||.|||::||.|||.:|:|:..||
 Frog   261 IYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKV 325

Human   325 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
            |.|.|.|||||.:||||||:||||:|||||||:.:|||.:|||||
 Frog   326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PABPC4L	NP_001108206.3	RRM	10..>369	CDD:330708	240/358 (67%)
pabpc1l	NP_001005062.1	PABP-1234	11..612	CDD:130689	242/360 (67%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
NCBI	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1027234at2759
OrthoFinder	1	1.000	-	-		FOG0000294
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.920