| Sequence 1: | NP_001108206.3 | Gene: | PABPC4L / 132430 | HGNCID: | 31955 | Length: | 370 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_958453.1 | Gene: | pabpc4 / 321035 | ZFINID: | ZDB-GENE-030131-9663 | Length: | 637 | Species: | Danio rerio |
| Alignment Length: | 371 | Identity: | 278/371 - (74%) |
|---|---|---|---|
| Similarity: | 320/371 - (86%) | Gaps: | 2/371 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MN--VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Human 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSK 128
Human 129 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVY 193
Human 194 IKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQ 258
Human 259 LIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVK 323
Human 324 VMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| PABPC4L | NP_001108206.3 | RRM | 10..>369 | CDD:330708 | 271/358 (76%) |
| pabpc4 | NP_958453.1 | PABP-1234 | 12..614 | CDD:130689 | 273/360 (76%) |
| RRM1_I_PABPs | 13..92 | CDD:240824 | 59/78 (76%) | ||
| RRM2_I_PABPs | 98..173 | CDD:240825 | 56/74 (76%) | ||
| RRM3_I_PABPs | 191..270 | CDD:240826 | 59/78 (76%) | ||
| RRM4_I_PABPs | 294..371 | CDD:240827 | 61/76 (80%) | ||
| PABP | 546..613 | CDD:279051 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| NCBI | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 1 | 1.010 | - | - | D1027234at2759 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0000294 | |
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 1 | 1.100 | - | - | O | PTHR24012 |
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| ZFIN | 0 | 0.000 | Not matched by this tool. | |||
| 5 | 5.020 | |||||