DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyp26a1 and Cyp4aa1

DIOPT Version :9

Sequence 1:NP_031837.2 Gene:Cyp26a1 / 13082 MGIID:1096359 Length:497 Species:Mus musculus
Sequence 2:NP_611067.2 Gene:Cyp4aa1 / 36752 FlyBaseID:FBgn0034053 Length:510 Species:Drosophila melanogaster


Alignment Length:514 Identity:118/514 - (22%)
Similarity:207/514 - (40%) Gaps:94/514 - (18%)


- Green bases have known domain annotations that are detailed below.


Mouse    11 LCTFVLPLLLFLAALKLWDLYC-VSSRDRSCALPL----PPGTMGFPFFGETLQMV---LQRR-- 65
            ||:.   |:|.:.:|.::..|. :::..||..|.|    ||   ..||.|..:.:.   |.||  
  Fly    15 LCSI---LILLVISLSIYTFYATLNTYLRSVLLSLRLTGPP---SLPFLGNCMLVTDKDLMRRCA 73

Mouse    66 -KFLQMKRRKYGFIYKTHLFGRPTVRVMGADNVRRILLGEHRLVSVHWPASVRTILGAGCLSNLH 129
             |...:    ||.:.:..:...|...|:..::::.||..:.....|.:...:...||.|.::: .
  Fly    74 GKAFDL----YGSLVRIWVLLFPFFAVLEPEDLQVILSSKKHTNKVFFYRLMHNFLGDGLITS-S 133

Mouse   130 DSSHKQRKKVIMQAFSREALQCYVPV----------------------IAEEVSSCLEQWLSCGE 172
            .|.....:::|..||....|:.::..                      ||:.|::|:   |....
  Fly   134 GSKWSNHRRLIQPAFHHNLLEKFIDTFVDASQSLYENLDAEAVGTEINIAKYVNNCV---LDILN 195

Mouse   173 RGLLVYPEVKRLMFRIAMRILLGCEPGPAGGGEDEQQLVEA-FEE---MTRNLFSLP---IDVPF 230
            ..:|..|..||                    |:|...:.:: |.:   |....|:.|   :|   
  Fly   196 EAVLGVPIKKR--------------------GQDVAMMEDSPFRQGKIMMPARFTQPWLLLD--- 237

Mouse   231 SGLYRGVKARN---LIHARIEENIRAKIRRLQATEPDGGCKDALQLLIEHSWERGER----LDMQ 288
             |:|...|..|   ....|:.:..|..|:|.:..:.:.......:.|::|..|..|.    .:..
  Fly   238 -GIYHWTKMANDELNQKKRLNDFTRKMIQRRRQIQNNNNGNSERKCLLDHMIEISESNRDFTEED 301

Mouse   289 ALKQSSTELLFGGHETTASAATSLITYLGLYPHVLQKVREEIKSKGLLCKSNQDNKLDMETLEQL 353
            .:.::.|.:| .|.::..:|....:..|...|....:...|:.:  :...||:  ...|..|.::
  Fly   302 IVNEACTFML-AGQDSVGAAVAFTLFLLTQNPECQDRCVLELAT--IFEDSNR--APTMTDLHEM 361

Mouse   354 KYTGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGWNVIYSICDTHDVADIFTNKEEFNPDR 418
            :|....|||.|||.|.||...|...:...|..:.:|.|.||......||.:|.|:.:.|:|.|:|
  Fly   362 RYMEMCIKEALRLYPSVPLIARKLGEEVRLAKHTLPAGSNVFICPYATHRLAHIYPDPEKFQPER 426

Mouse   419 FIVPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHCDWQLLNGPPTMKTS 477
            |...:.|:...::|:||..|.|.|:|..||.:.:|.....|.|  .:|||  |.|.||:
  Fly   427 FSPENSENRHPYAFLPFSAGPRYCIGNRFAIMEIKTIVSRLLR--SYQLL--PVTGKTT 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp26a1NP_031837.2 p450 43..491 CDD:299894 109/481 (23%)
Cyp4aa1NP_611067.2 p450 50..475 CDD:278495 104/468 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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