DRSC/TRiP Functional Genomics Resources

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Protein Alignment Celf1 and bru3

DIOPT Version :9

Sequence 1:XP_017170784.1 Gene:Celf1 / 13046 MGIID:1342295 Length:514 Species:Mus musculus
Sequence 2:NP_001369050.1 Gene:bru3 / 39527 FlyBaseID:FBgn0264001 Length:552 Species:Drosophila melanogaster


Alignment Length:431 Identity:181/431 - (41%)
Similarity:241/431 - (55%) Gaps:74/431 - (17%)


- Green bases have known domain annotations that are detailed below.


Mouse   115 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAF 179
            |:..:|:|||::|..:...|||||:||:||:.||:|:|.:|..||.||||.|||||||.|:||||
  Fly    21 MNRALQLKPAENESRSEHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCAF 85

Mouse   180 VTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNL 244
            |.|.::..||:||..:|.:|||.|.||.:|||:|||:|:::.:||.|                 :
  Fly    86 VKFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKERQIRRMQQ-----------------M 133

Mouse   245 AG-LNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGT 308
            || :|.|.|                   ...:...|.|.. |.|.|..|.:||||:|..:..:..
  Fly   134 AGHMNLLNP-------------------FVFNQFSPYGAY-AQQQQQAALMAAAATAPGSAAAYM 178

Mouse   309 NALTTSSSPLSVLTSSAGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAA----LNG 369
            |.:...::.:....:..|..||..|...  |..::|| .|..|...|....:.|..||    .||
  Fly   179 NPMAALATQIPHGLNGTGQPPSLPSPTM--PNFNMGA-NTPNGQPGGAAAAAAAAAAADGVFTNG 240

Mouse   370 -------------GLGSSGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQ--NLLTQQSIGAA 419
                         .:...||.||..:|::   .|:.|:..:...|.|.:|.|  ..|.......|
  Fly   241 IPQTAFPGHPLHLTIPPQGLPNGDAATLQ---HAFPGLPPFPGVAFPAVYGQFPQALPPPLAAVA 302

Mouse   420 GSQKE-----------GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFG 473
            .:|:|           ||||.|||||||||||||.:|:|||:|||||:|:|||||:.||.|||||
  Fly   303 PTQREDFLMFPGCSISGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFG 367

Mouse   474 FVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 514
            |||:|||.|||||||:|||||||||||||||||.|:.|:||
  Fly   368 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDASRPY 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Celf1XP_017170784.1 RRM1_CELF1_2_Bruno 42..125 CDD:410040 4/9 (44%)
RRM2_CELF1_2 134..214 CDD:410042 48/79 (61%)
RRM3_CELF1_2 422..513 CDD:241082 73/101 (72%)
bru3NP_001369050.1 RRM2_CELF3_4_5_6 40..120 CDD:410043 48/79 (61%)
ELAV_HUD_SF 43..404 CDD:273741 169/403 (42%)
RRM3_CELF3_4_5_6 319..397 CDD:241083 64/77 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0144
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54704
OrthoDB 1 1.010 - - D1209165at2759
OrthoFinder 1 1.000 - - FOG0000286
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X208
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.830

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