DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ctsd and cathD

DIOPT Version :10

Sequence 1:NP_034113.1 Gene:Ctsd / 13033 MGIID:88562 Length:410 Species:Mus musculus
Sequence 2:NP_652013.1 Gene:cathD / 45268 FlyBaseID:FBgn0029093 Length:392 Species:Drosophila melanogaster


Alignment Length:410 Identity:219/410 - (53%)
Similarity:279/410 - (68%) Gaps:30/410 - (7%)


- Green bases have known domain annotations that are detailed below.


Mouse     6 VLLLILGLLASS--------SFAIIRIPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPK 62
            |.||::..||::        ...::|:||.||.|.||...:||..::.|.:     :|.....| 
  Fly     4 VALLLVAFLAAAVAHPNSQEKPGLLRVPLHKFQSARRHFADVGTELQQLRI-----RYGGGDVP- 62

Mouse    63 TTEPVSELLKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDK 127
              ||:|    ||:||||||.|.||:|||.|.||||||||||||||..|.:.:|||.:|:||::.|
  Fly    63 --EPLS----NYMDAQYYGPIAIGSPPQNFRVVFDTGSSNLWVPSKKCHLTNIACLMHNKYDASK 121

Mouse   128 SSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAK 192
            |.||.||||.|.|.|||||||||||.||||:         .|:.::.|.|.||..:||:||||||
  Fly   122 SKTYTKNGTEFAIQYGSGSLSGYLSTDTVSI---------AGLDIKDQTFAEALSEPGLVFVAAK 177

Mouse   193 FDGILGMGYPHISVNNVLPVFDNLMQQKLVDKNIFSFYLNRDPEGQPGGELMLGGTDSKYYHGEL 257
            ||||||:||..|||:.|.|.|..:.:|.|:...:|||||||||....|||::.||:|..:|.||.
  Fly   178 FDGILGLGYNSISVDKVKPPFYAMYEQGLISAPVFSFYLNRDPASPEGGEIIFGGSDPNHYTGEF 242

Mouse   258 SYLNVTRKAYWQVHMDQLEVGNELTLCKGGCEAIVDTGTSLLVGPVEEVKELQKAIGAVPLIQGE 322
            :||.||||||||:.||...:| :|.||||||:.|.||||||:..|:||...:.:.||..|:|.|:
  Fly   243 TYLPVTRKAYWQIKMDAASIG-DLQLCKGGCQVIADTGTSLIAAPLEEATSINQKIGGTPIIGGQ 306

Mouse   323 YMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVF 387
            |::.|:.:..||.:...||||.:||....|||:|:|.|||||||||||:|||||:||||||||||
  Fly   307 YVVSCDLIPQLPVIKFVLGGKTFELEGKDYILRVAQMGKTICLSGFMGLDIPPPNGPLWILGDVF 371

Mouse   388 IGSYYTVFDRDNNRVGFANA 407
            ||.|||.||..|:|||||:|
  Fly   372 IGKYYTEFDMGNDRVGFADA 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CtsdNP_034113.1 A1_Propeptide 23..49 CDD:462326 11/25 (44%)
Cathepsin_D2 73..405 CDD:133157 195/331 (59%)
cathDNP_652013.1 A1_Propeptide 29..56 CDD:462326 11/31 (35%)
pepsin_retropepsin_like 62..389 CDD:472175 199/343 (58%)

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