DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ctsd and Bace

DIOPT Version :9

Sequence 1:NP_034113.1 Gene:Ctsd / 13033 MGIID:88562 Length:410 Species:Mus musculus
Sequence 2:NP_001285756.1 Gene:Bace / 34182 FlyBaseID:FBgn0032049 Length:372 Species:Drosophila melanogaster


Alignment Length:409 Identity:179/409 - (43%)
Similarity:234/409 - (57%) Gaps:47/409 - (11%)


- Green bases have known domain annotations that are detailed below.


Mouse     2 KTPGVLLLILGLLASSSFAIIRIPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPKTTEP 66
            ||..|::|   |.|.:|..:.|:|:.|..:..:|...|  ..|...|:   |||.:.|.....| 
  Fly     3 KTIAVVVL---LAALASAELHRVPILKEQNFVKTRQNV--LAEKSYLR---TKYQLPSLRSVDE- 58

Mouse    67 VSELLKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTY 131
              |.|.|.::..|||.|.||||.|.|.|:||:|||||||||..||  ..||..|::|:|..||||
  Fly    59 --EQLSNSMNMAYYGAISIGTPAQSFKVLFDSGSSNLWVPSNTCK--SDACLTHNQYDSSASSTY 119

Mouse   132 VKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAKFDGI 196
            |.||.||.|.||:|||:||||.|||.|         .|:.::.|.|.|:|.:||..|..|.||||
  Fly   120 VANGESFSIQYGTGSLTGYLSTDTVDV---------NGLSIQSQTFAESTNEPGTNFNDANFDGI 175

Mouse   197 LGMGYPHISVNNVLPVFDNLMQQKLVDKNIFSFYLNRDPEGQPGGELMLGGTDSKYYHGELSYLN 261
            |||.|..::|:.|.|.|.|::.|.|||.::|||||.||.....||||:.||:|:..|.|.|:|:.
  Fly   176 LGMAYESLAVDGVAPPFYNMVSQGLVDNSVFSFYLARDGTSTMGGELIFGGSDASLYSGALTYVP 240

Mouse   262 VTRKAYWQVHMDQLEVGNEL---TLCKGGCEAIVDTGTSLLVGPVEEVKELQKAIGAVPLIQGEY 323
            ::.:.|||..|    .|:.:   :|| ..|:||.||||||:|.|......|.:.:.    :..:.
  Fly   241 ISEQGYWQFTM----AGSSIDGYSLC-DDCQAIADTGTSLIVAPYNAYITLSEILN----VGEDG 296

Mouse   324 MIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGF--MGMDIPPPSGPLWILGDV 386
            .:.|..|||||.|...:||.|:.|.|..||:: |.|.   |:|.|  ||.|       .||||||
  Fly   297 YLDCSSVSSLPDVTFNIGGTNFVLKPSAYIIQ-SDGN---CMSAFEYMGTD-------FWILGDV 350

Mouse   387 FIGSYYTVFDRDNNRVGFA 405
            |||.|||.||..|||:|||
  Fly   351 FIGQYYTEFDLGNNRIGFA 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CtsdNP_034113.1 A1_Propeptide 21..46 CDD:285240 6/24 (25%)
Cathepsin_D2 73..405 CDD:133157 156/336 (46%)
Asp 78..407 CDD:278455 157/333 (47%)
BaceNP_001285756.1 pepsin_retropepsin_like 59..369 CDD:299705 158/340 (46%)
Asp 68..371 CDD:278455 157/333 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1339
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54317
OrthoDB 1 1.010 - - D1619495at2759
OrthoFinder 1 1.000 - - FOG0000066
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.890

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