DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and Mp

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_001246651.1 Gene:Mp / 38769 FlyBaseID:FBgn0260660 Length:1039 Species:Drosophila melanogaster


Alignment Length:576 Identity:190/576 - (32%)
Similarity:242/576 - (42%) Gaps:154/576 - (26%)


- Green bases have known domain annotations that are detailed below.


Human    96 YGGLHFSDQ-----VEVFSPPGSDRASFIKNLQGISSFRRGTFTDCALANMTEQIRQD-----RS 150
            :|..|..|:     ::|.    ||:.||              :.||.|.|.|...|:.     .|
  Fly   149 FGVAHVPDKWNSIALQVL----SDKVSF--------------YYDCELRNTTLVTREPIELVFDS 195

Human   151 KGTVHFAVVITDGHVTGSPCGGIKLQA--ER----AREEGIRLFAVAPNQNLKEQGLRDIASTPH 209
            ..|::..       ..||..|| |.:.  |:    ...:.|.:..:.|.:       ..||.|..
  Fly   196 ASTLYIG-------QAGSIIGG-KFEGYLEKINVYGNPDAINVTCMPPPK-------ATIAPTTA 245

Human   210 E----LYRNDYATML-PDSTE---IDQDTINRIIKVMKHEAYGECYKVSCLEIPGP---SGPKGY 263
            :    .|......:| .||||   :..|..|      ..:...:.:..|.::.||.   :..:.|
  Fly   246 DDGSIFYEGSGENILFEDSTEANILSDDFWN------TGDEATDIFDASGMQPPGQTQYTHERPY 304

Human   264 RGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKGVPGFKGEKGEF---------GA----- 314
            ||.|         ||.|::|.:|| .|.||   |||.|.||.|||...:         ||     
  Fly   305 RGIK---------GEKGERGPKGD-SIRGP---PGPPGPPGPKGETAPYPPFVETTSAGAKYTGE 356

Human   315 -------------------DGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEA 360
                               :..:||||..||:|.               .|.||:.|..|.||..
  Fly   357 CTCNASDILEAIKDNESLRESLRGAPGTPGKDGK---------------PGTPGHTGATGVPGAR 406

Human   361 GSPGERGDQGGKGDP---GRPGRRGPPGEIGAKG-SKGYQ-----GNSGAPGSPGVKGAKGGPGP 416
            |:.|..|.||.||:|   |.||..||||..|..| .:.|.     .:.||.......||||.||.
  Fly   407 GARGSEGAQGLKGEPGVDGLPGVMGPPGPPGPPGLPENYDESLMVNSMGAFRGTTQPGAKGVPGE 471

Human   417 RGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLP---GPRGPQG 478
            :|..|:.|.|||||.||:.|..|.|||.|:||..|..||.|:||..|  |..||.   |.:|.:|
  Fly   472 KGDAGQKGERGDPGHKGAHGPSGAKGEPGEPGTPGLPGLPGQVGQPG--GLDGLASANGTKGEKG 534

Human   479 ALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFG 543
            ..||.|.:|.||..|..||.|..|:|||.||.|..|  .||..|..||.|..||:|..|||.  |
  Fly   535 EKGEKGMRGRRGGTGATGPIGPPGKPGPMGDIGHSG--RPGMTGPKGEMGPKGPKGDSGGRE--G 595

Human   544 LKGEPGRKGEKGEPADPGPPGEPGPRGPRG---------VPGPEGEPGPPGDPGLT 590
            |||:.|.:|:.|....|||||.|...|..|         :|||.|.|||||.|||:
  Fly   596 LKGDKGDRGQDGRDGLPGPPGLPSTGGGDGDSGGVQYIPMPGPPGPPGPPGLPGLS 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256 36/183 (20%)
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757 34/158 (22%)
gly_rich_SclB <255..>513 CDD:468478 114/305 (37%)
Triple-helical region 257..590 151/389 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 149/387 (39%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 1/1 (100%)
Collagen 487..556 CDD:460189 33/68 (49%)
Cell attachment site. /evidence=ECO:0000255 489..491 1/1 (100%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541 1/1 (100%)
Nonhelical region 591..1019 190/576 (33%)
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757
VWA 833..1007 CDD:459670
MpNP_001246651.1 LamG 58..222 CDD:473984 22/98 (22%)
gly_rich_SclB <292..>421 CDD:468478 47/156 (30%)
gly_rich_SclB <379..>616 CDD:468478 111/257 (43%)
Collagen_trimer 744..792 CDD:466257
Endostatin-like 831..999 CDD:238151
Blue background indicates that the domain is not in the aligned region.

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