DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment COL6A2 and col-94

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_001370010.1 Gene:col-94 / 259336 WormBaseID:WBGene00000669 Length:304 Species:Caenorhabditis elegans


Alignment Length:290 Identity:96/290 - (33%)
Similarity:117/290 - (40%) Gaps:90/290 - (31%)


- Green bases have known domain annotations that are detailed below.


Human   299 PKGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGD--PGNRGPDGYPGEAG 361
            ||....|..:.| :|.|.       |.:.|..|.:|       ..|.|.  ||..||.|.||:.|
 Worm    71 PKNASRFARQAG-YGTDE-------AVETGNTGSQG-------GSCSGCCLPGAAGPAGTPGKPG 120

Human   362 SPGERGDQGGKGDPGRPGRRG------------PPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGP 414
            .||..|..|..|:||||..:.            |.|..||.|:.|.||::||||..|.....|.|
 Worm   121 RPGRPGAAGLPGNPGRPPAQPCEPITPPPCKPCPQGPAGAPGAPGPQGDAGAPGQAGQGSGAGAP 185

Human   415 GPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGA 479
            ||.||||.||..|:||..|:||..|...:                                    
 Worm   186 GPAGPKGAPGAPGNPGQAGAPGQPGSDAQ------------------------------------ 214

Human   480 LGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGL 544
                 .:.|.|.||.|||:   |.|||.|.||.|        |.||:.|.|||:||.|.      
 Worm   215 -----SESSPGAPGQAGPQ---GPPGPAGSPGAP--------GGPGQAGAPGPKGPSGA------ 257

Human   545 KGEPGRKGEKGEPADPGPPGEPGPRGPRGV 574
               ||:.|..|.|..||.||:.|..|.:|:
 Worm   258 ---PGQPGADGNPGAPGQPGQSGGAGEKGI 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757
gly_rich_SclB <255..>513 CDD:468478 73/227 (32%)
Triple-helical region 257..590 96/290 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 96/290 (33%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 28/68 (41%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541 0/1 (0%)
Nonhelical region 591..1019
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757
VWA 833..1007 CDD:459670
col-94NP_001370010.1 Col_cuticle_N 12..64 CDD:198156
gly_rich_SclB <107..>283 CDD:468478 83/236 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.