| Sequence 1: | NP_001840.3 | Gene: | COL6A2 / 1292 | HGNCID: | 2212 | Length: | 1019 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_504735.1 | Gene: | col-141 / 188515 | WormBaseID: | WBGene00000714 | Length: | 314 | Species: | Caenorhabditis elegans |
| Alignment Length: | 258 | Identity: | 93/258 - (36%) |
|---|---|---|---|
| Similarity: | 103/258 - (39%) | Gaps: | 77/258 - (29%) |
- Green bases have known domain annotations that are detailed below.
|
Human 371 GKGDPGRP-GRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGP-------------GPRGPKG 421
Human 422 EPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQ 486
Human 487 GSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRK 551
Human 552 GEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLTECDVMTYVRETCGCCDCEKRCGAL 614 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| COL6A2 | NP_001840.3 | Nonhelical region | 21..256 | ||
| vWA_collagen_alpha_1-VI-type | 43..231 | CDD:238757 | |||
| gly_rich_SclB | <255..>513 | CDD:468478 | 55/155 (35%) | ||
| Triple-helical region | 257..590 | 89/232 (38%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 257..588 | 87/230 (38%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 366..368 | ||||
| Cell attachment site. /evidence=ECO:0000255 | 426..428 | 0/1 (0%) | |||
| Collagen | 487..556 | CDD:460189 | 23/68 (34%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 489..491 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 498..500 | 1/1 (100%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 539..541 | 0/1 (0%) | |||
| Nonhelical region | 591..1019 | 4/24 (17%) | |||
| vWA_collagen_alpha_1-VI-type | 612..803 | CDD:238757 | 1/3 (33%) | ||
| VWA | 833..1007 | CDD:459670 | |||
| col-141 | NP_504735.1 | Col_cuticle_N | 13..64 | CDD:198156 | |
| gly_rich_SclB | <114..>271 | CDD:468478 | 78/219 (36%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||