DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and col-142

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_504736.1 Gene:col-142 / 188514 WormBaseID:WBGene00000715 Length:325 Species:Caenorhabditis elegans


Alignment Length:308 Identity:104/308 - (33%)
Similarity:122/308 - (39%) Gaps:108/308 - (35%)


- Green bases have known domain annotations that are detailed below.


Human   319 GAPGLAGKNGTDGQ--KGKLGR---IGPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDP--G 376
            |:..|.|:|....|  .|...|   .||||..|.||..|..|:||.||.||    .|.:.:|  |
 Worm    66 GSSFLLGRNKRQAQCNCGAQSRGCPAGPPGPPGQPGAPGEQGHPGLAGQPG----SGARINPATG 126

Human   377 RPG-----RRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPG 436
            |||     ..|.||..|..|:.|.:||:|.||:|...|.:|.||||||.|:.|..|.||..||||
 Worm   127 RPGFCITCPAGAPGPAGPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPG 191

Human   437 SDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDS 501
            :.|                      :|.:..||||||.      |.|                  
 Worm   192 NPG----------------------RGGQRSRGLPGPS------GRP------------------ 210

Human   502 GQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEP 566
            |.|||.|.||:||.|        |..|.|||:||                        |||.|:|
 Worm   211 GPPGPAGGPGQPGHS--------GGAGSPGPQGP------------------------PGPSGQP 243

Human   567 GPRGPRGVPGPEGEPGPPGDPGLTECDVMTYVRETCGCCDCEKRCGAL 614
            |..|..||||..|.||.||.              ....|.|..|..|:
 Worm   244 GHSGNDGVPGAPGNPGSPGG--------------DAAYCPCPARSAAI 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757
gly_rich_SclB <255..>513 CDD:468478 74/205 (36%)
Triple-helical region 257..590 100/282 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 100/280 (36%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 17/68 (25%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541 0/1 (0%)
Nonhelical region 591..1019 4/24 (17%)
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757 1/3 (33%)
VWA 833..1007 CDD:459670
col-142NP_504736.1 Col_cuticle_N 5..57 CDD:198156
Blue background indicates that the domain is not in the aligned region.

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