DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and col-105

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_500071.1 Gene:col-105 / 186529 WormBaseID:WBGene00000679 Length:290 Species:Caenorhabditis elegans


Alignment Length:315 Identity:104/315 - (33%)
Similarity:123/315 - (39%) Gaps:103/315 - (32%)


- Green bases have known domain annotations that are detailed below.


Human   210 ELYRNDYATMLPDSTEIDQDTINRIIKVMKHEAYG------ECYKVSCLEIPGPSGPKGYRGQKG 268
            |..||....:..:..:..|...||..:    :|||      || ...|::              |
 Worm    49 EFCRNSARDIYGEVQQFKQIPRNRTTR----QAYGSLLDTDEC-DGCCIQ--------------G 94

Human   269 AKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQK 333
            |.|..||||.||:               ||..||||..|..|:                 ...|.
 Worm    95 APGPTGEPGRPGR---------------PGKPGVPGMPGNPGK-----------------PPQQP 127

Human   334 GKLGRIGPPGCK----GDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKG 394
            .:|  :.||.|.    |.||..||.|.||:.|.||..|::|..|:||.||..|||||.|..|::|
 Worm   128 CEL--VTPPPCSPCPAGPPGKPGPQGAPGDIGQPGNPGERGMDGEPGPPGPTGPPGEPGLPGAQG 190

Human   395 YQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEV 459
            ..|..|....| |....|.|||.|..|.||..|||               ||.|.|||       
 Worm   191 ITGQPGVNAEP-VAYRAGAPGPPGEPGPPGAHGDP---------------GDLGEEGP------- 232

Human   460 GNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPG 514
                    .|||||:||.||         .|.||:.||.|..||||..||.|..|
 Worm   233 --------PGLPGPKGPPGA---------SGIPGNDGPPGARGQPGLSGDSGEKG 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256 12/51 (24%)
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757 4/20 (20%)
gly_rich_SclB <255..>513 CDD:468478 91/261 (35%)
Triple-helical region 257..590 92/262 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 92/262 (35%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 14/28 (50%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541
Nonhelical region 591..1019
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757
VWA 833..1007 CDD:459670
col-105NP_500071.1 Col_cuticle_N 10..62 CDD:198156 3/12 (25%)
gly_rich_SclB <93..>270 CDD:468478 91/264 (34%)
Blue background indicates that the domain is not in the aligned region.

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