DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment COL6A2 and col-156

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_505902.1 Gene:col-156 / 186439 WormBaseID:WBGene00000729 Length:295 Species:Caenorhabditis elegans


Alignment Length:283 Identity:96/283 - (33%)
Similarity:115/283 - (40%) Gaps:75/283 - (26%)


- Green bases have known domain annotations that are detailed below.


Human   334 GKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGN 398
            |:..|.....|...|.| .|.|.||..|:||::|..|..|.||..|:......|.|..|:.....
 Worm    73 GRNKRQASCNCGTQPSN-CPAGPPGPPGAPGDQGLDGAPGQPGNVGQNAVVASIAASTSECIPCP 136

Human   399 SGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKG 463
            :||            |||:||.|.||.   ||..|.||.||..|:.|.||..||           
 Worm   137 AGA------------PGPQGPDGAPGA---PGPSGQPGQDGASGQPGAPGVAGP----------- 175

Human   464 AKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKG 528
             :||.|.|         |:||:||..|.||..|.||       :|.||.||  .||..||||..|
 Worm   176 -QGDAGTP---------GQPGQQGQDGRPGQNGRRG-------RGTPGAPG--APGAAGAPGNNG 221

Human   529 EPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLTECD 593
            :||..|..      |..|.||..|..|:|..||..|:||..|..||||.:               
 Worm   222 QPGQDGAP------GQAGAPGASGPDGQPGQPGEDGQPGENGLDGVPGTD--------------- 265

Human   594 VMTYVRETCGCCDCEKRCGALDV 616
                    ...|.|..|.|.::|
 Worm   266 --------AAYCPCPARSGPVEV 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757
gly_rich_SclB <255..>513 CDD:468478 62/178 (35%)
Triple-helical region 257..590 91/255 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 91/253 (36%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 27/68 (40%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 1/1 (100%)
Cell attachment site. /evidence=ECO:0000255 539..541 0/1 (0%)
Nonhelical region 591..1019 5/26 (19%)
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757 2/5 (40%)
VWA 833..1007 CDD:459670
col-156NP_505902.1 Col_cuticle_N 4..56 CDD:198156
gly_rich_SclB <104..>265 CDD:468478 79/211 (37%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.