| Sequence 1: | NP_001840.3 | Gene: | COL6A2 / 1292 | HGNCID: | 2212 | Length: | 1019 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_510274.1 | Gene: | col-44 / 186211 | WormBaseID: | WBGene00000621 | Length: | 304 | Species: | Caenorhabditis elegans |
| Alignment Length: | 273 | Identity: | 104/273 - (38%) |
|---|---|---|---|
| Similarity: | 112/273 - (41%) | Gaps: | 80/273 - (29%) |
- Green bases have known domain annotations that are detailed below.
|
Human 313 GADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGR 377
Human 378 PGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGG-PGPRGPKGEPGRRGDPGTKGSPGSDGPK 441
Human 442 GEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQG--ALGEPGKQGSRGDPGDAGPRGDSGQP 504
Human 505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPR 569
Human 570 GPRGVPGPEGEPG 582 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| COL6A2 | NP_001840.3 | Nonhelical region | 21..256 | ||
| vWA_collagen_alpha_1-VI-type | 43..231 | CDD:238757 | |||
| gly_rich_SclB | <255..>513 | CDD:468478 | 79/202 (39%) | ||
| Triple-helical region | 257..590 | 104/273 (38%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 257..588 | 104/273 (38%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 366..368 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 426..428 | 0/1 (0%) | |||
| Collagen | 487..556 | CDD:460189 | 22/68 (32%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 489..491 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 498..500 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 539..541 | 0/1 (0%) | |||
| Nonhelical region | 591..1019 | ||||
| vWA_collagen_alpha_1-VI-type | 612..803 | CDD:238757 | |||
| VWA | 833..1007 | CDD:459670 | |||
| col-44 | NP_510274.1 | Col_cuticle_N | 14..66 | CDD:198156 | |
| Blue background indicates that the domain is not in the aligned region. | |||||