DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and col-9

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_510273.1 Gene:col-9 / 186210 WormBaseID:WBGene00000598 Length:339 Species:Caenorhabditis elegans


Alignment Length:410 Identity:120/410 - (29%)
Similarity:150/410 - (36%) Gaps:146/410 - (35%)


- Green bases have known domain annotations that are detailed below.


Human   222 DSTEIDQDTI-NRIIKVMKHEAYGECYKVSCLEIPGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQ 285
            |.|| |.|.: ||.|:        |.|.|:             ||:    ||.|.....|...: 
 Worm    65 DMTE-DVDIVHNRTIR--------EAYTVT-------------RGE----GNTGYAVGRGSNIK- 102

Human   286 GDPGIEGPIGFPGPKGV-PGFKGEKGEFGADGRKGAPG----LAGKNGTDGQKGKLGRIGPPGCK 345
                         |:|. .|::.:|.:  .:|.:..|.    :|.:.||              |.
 Worm   103 -------------PRGYNTGYRSQKKK--NNGWRSPPRSGIVVASEGGT--------------CM 138

Human   346 G--DPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVK 408
            |  :||..||.|:||:.|.||.   .||.|.||.||       :||           :|..|..:
 Worm   139 GCCNPGPPGPSGHPGKPGRPGR---PGGHGMPGMPG-------LGA-----------SPCQPRTQ 182

Human   409 GAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGP 473
             ::....|:||.|.||..|.||.   ||..||.|:              .:.|.       ||||
 Worm   183 -SQCQQCPQGPPGPPGLNGQPGL---PGGMGPPGQ--------------SMSNV-------LPGP 222

Human   474 RGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGG 538
            .||.|..|:||..|..|.|         |.||.....|..||:.|||.|.||..|.||.....|.
 Worm   223 LGPPGPPGQPGNHGLAGQP---------GSPGQSVLGGIVGFAAPGPMGPPGLMGPPGLDAQNGA 278

Human   539 RGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLTECDVMTYVRETCG 603
            .| ||..|.||         .|||||.||..|..||||..|.....|:.|:              
 Worm   279 NG-FGPPGLPG---------PPGPPGRPGSDGNPGVPGQSGGSRRHGEKGV-------------- 319

Human   604 CCDCEKRCGALDVVFVIDSS 623
               |.|.|.....||..|.:
 Worm   320 ---CPKYCAMDGGVFFEDGT 336

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256 11/34 (32%)
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757 5/8 (63%)
gly_rich_SclB <255..>513 CDD:468478 70/264 (27%)
Triple-helical region 257..590 103/339 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 102/337 (30%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 25/68 (37%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541 0/1 (0%)
Nonhelical region 591..1019 6/33 (18%)
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757 3/12 (25%)
VWA 833..1007 CDD:459670