| Sequence 1: | NP_001840.3 | Gene: | COL6A2 / 1292 | HGNCID: | 2212 | Length: | 1019 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_491694.1 | Gene: | col-54 / 185226 | WormBaseID: | WBGene00000631 | Length: | 281 | Species: | Caenorhabditis elegans |
| Alignment Length: | 256 | Identity: | 94/256 - (36%) |
|---|---|---|---|
| Similarity: | 113/256 - (44%) | Gaps: | 62/256 - (24%) |
- Green bases have known domain annotations that are detailed below.
|
Human 343 GCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSK-GYQGNSGAPGSPG 406
Human 407 VKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLP 471
Human 472 GPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPE 536
Human 537 GGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPG-DPGLTECDVMT 596 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| COL6A2 | NP_001840.3 | Nonhelical region | 21..256 | ||
| vWA_collagen_alpha_1-VI-type | 43..231 | CDD:238757 | |||
| gly_rich_SclB | <255..>513 | CDD:468478 | 64/170 (38%) | ||
| Triple-helical region | 257..590 | 92/248 (37%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 257..588 | 92/246 (37%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 366..368 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 426..428 | 0/1 (0%) | |||
| Collagen | 487..556 | CDD:460189 | 26/68 (38%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 489..491 | 1/1 (100%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 498..500 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 539..541 | 0/1 (0%) | |||
| Nonhelical region | 591..1019 | 2/6 (33%) | |||
| vWA_collagen_alpha_1-VI-type | 612..803 | CDD:238757 | |||
| VWA | 833..1007 | CDD:459670 | |||
| col-54 | NP_491694.1 | Col_cuticle_N | 6..58 | CDD:198156 | |
| gly_rich_SclB | <88..>262 | CDD:468478 | 86/230 (37%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||