| Sequence 1: | NP_001840.3 | Gene: | COL6A2 / 1292 | HGNCID: | 2212 | Length: | 1019 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_491822.2 | Gene: | col-58 / 184957 | WormBaseID: | WBGene00000634 | Length: | 289 | Species: | Caenorhabditis elegans |
| Alignment Length: | 209 | Identity: | 92/209 - (44%) |
|---|---|---|---|
| Similarity: | 104/209 - (49%) | Gaps: | 47/209 - (22%) |
- Green bases have known domain annotations that are detailed below.
|
Human 340 GPPGCKGDPGNRGPDGYPGEAGSPGERGDQGG------KGDPGR-----PGRRGPPGEIGAKGSK 393
Human 394 GYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGE 458
Human 459 VGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGA 523
Human 524 PGEKGEPGPRGPEG 537 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| COL6A2 | NP_001840.3 | Nonhelical region | 21..256 | ||
| vWA_collagen_alpha_1-VI-type | 43..231 | CDD:238757 | |||
| gly_rich_SclB | <255..>513 | CDD:468478 | 82/183 (45%) | ||
| Triple-helical region | 257..590 | 92/209 (44%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 257..588 | 92/209 (44%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 366..368 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 426..428 | 0/1 (0%) | |||
| Collagen | 487..556 | CDD:460189 | 26/51 (51%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 489..491 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 498..500 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 539..541 | ||||
| Nonhelical region | 591..1019 | ||||
| vWA_collagen_alpha_1-VI-type | 612..803 | CDD:238757 | |||
| VWA | 833..1007 | CDD:459670 | |||
| col-58 | NP_491822.2 | Col_cuticle_N | 10..61 | CDD:198156 | |
| gly_rich_SclB | <113..>243 | CDD:468478 | 66/157 (42%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||