DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and C16E9.1

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_509176.2 Gene:C16E9.1 / 182693 WormBaseID:WBGene00015865 Length:565 Species:Caenorhabditis elegans


Alignment Length:586 Identity:127/586 - (21%)
Similarity:210/586 - (35%) Gaps:159/586 - (27%)


- Green bases have known domain annotations that are detailed below.


Human   504 PGPKGDPGRPGFSYPG-----PRGAPGEKGEPGPRGPE---------------------GGRGDF 542
            |.|..||  ||:....     |..||...|...|..|:                     |...|.
 Worm    38 PMPPTDP--PGYDPDSTFDTTPTPAPPSNGLRAPPMPKWTQEIPKESSGQQLKIEDVVVGNNIDS 100

Human   543 GLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLTECDVMTYV---RETCGC 604
            .::...|  ...|:....|...:.|........|.:|:..|         |:|..:   .|..| 
 Worm   101 HVEEVNG--SGSGDTEGSGSGDKSGTEESFDASGAQGDSLP---------DIMKAMDSEAEVLG- 153

Human   605 CDCEKRCGALDVVFVIDSSES--------IGYTNFTLEKNFVINVVNRLGAIAKDPKSETGTRVG 661
            .:|..     |::||||::.|        |.|....:|...|...|:.:|||....:.:..|::.
 Worm   154 VNCPS-----DIIFVIDATSSVRGIFEQYITYIEKVVEGLDVQPTVDHVGAIVYSSEKKQRTKIK 213

Human   662 VVQYSHEGTFEAIQLDDERIDSLSSFKEAVKNLEWIAGGTWTPSALKFAYDRLIKESRRQKTRVF 726
            :.::...|                |..:||..|.:.:|.|.|..|||||.:.  .|.||:...:.
 Worm   214 LGEHKDRG----------------SLVKAVDELPFFSGITATGQALKFAANH--TEGRRENFTLN 260

Human   727 AVVITDGRHDPRDDDLNLRALCDRDV---TVTAIGIGDMFHEKH------ESENLYSIA------ 776
            .|::|||.   ..|.:...|...|:|   .:.|:.||::|..|.      ..:|:.:.:      
 Worm   261 YVILTDGY---SYDLIESGARVLREVPNSAIYAVSIGEIFLRKELEMITGNPDNVLTGSMSYGTL 322

Human   777 ------CD-----------KPQQVRNMTLFSD-----------LVAEKFIDDMEDVLCPDPQIVC 813
                  ||           .|..||.....||           |.|:|..:|.  |..|:.:   
 Worm   323 VKRLKLCDARIKAATLKDSNPGLVRPGEFLSDRFQHRSRLTANLEAKKHTEDF--VKTPEKR--- 382

Human   814 PDLPCQTELSVAQCTQRPVDIVFLLDGSERLGEQNFHKARRFVEQVARRLTLARRDDDPLNA-RV 877
                    ..|..|.   .||..:.|.|..| |:||.|...|.:|:..::.::.      || ||
 Worm   383 --------GPVKDCI---YDIGIIFDSSGSL-EKNFQKQLAFAKQLVEQMPISD------NATRV 429

Human   878 ALLQFGGPGEQQVAFPLSHNLTAIHEALETTQYLNSFSHVGAGVVHAINAIVRSPRGGARRHAEL 942
            .::||.|..:.:|....|.|.:.:...::.:.:.:..:...    .|:..:........|.:|:|
 Worm   430 GIVQFAGKTKVRVLANFSQNKSQLKTIIDRSPFYSGTTFTN----QALKKMAALYEESKRPNAKL 490

Human   943 SFVFLTDGVTGNDSLHESAHSMRKQNVVPTVLALGSD----VDMDVLTTLSLGDRAAVFHEKDYD 1003
            ..:..|||.:..|: .|...:::.|.||...:.:.:|    ::|..|..:      |...|..||
 Worm   491 KLMLFTDGYSAEDT-SEGEEALKSQGVVVYTVGISTDKSAGLNMKELRGM------ATSSEHYYD 548

Human  1004 S 1004
            |
 Worm   549 S 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757
gly_rich_SclB <255..>513 CDD:468478 4/8 (50%)
Triple-helical region 257..590 21/111 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 21/109 (19%)
Cell attachment site. /evidence=ECO:0000255 366..368
Cell attachment site. /evidence=ECO:0000255 426..428
Collagen 487..556 CDD:460189 15/77 (19%)
Cell attachment site. /evidence=ECO:0000255 489..491
Cell attachment site. /evidence=ECO:0000255 498..500
Cell attachment site. /evidence=ECO:0000255 539..541 0/1 (0%)
Nonhelical region 591..1019 106/473 (22%)
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757 56/241 (23%)
VWA 833..1007 CDD:459670 41/177 (23%)
C16E9.1NP_509176.2 VWA_integrin_invertebrates 158..315 CDD:238753 45/182 (25%)
VWA 391..555 CDD:459670 41/177 (23%)
Blue background indicates that the domain is not in the aligned region.

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