DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and col-179

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_509870.1 Gene:col-179 / 181308 WormBaseID:WBGene00000752 Length:283 Species:Caenorhabditis elegans


Alignment Length:301 Identity:105/301 - (34%)
Similarity:120/301 - (39%) Gaps:84/301 - (27%)


- Green bases have known domain annotations that are detailed below.


Human   225 EIDQDTINRIIKVMKHEAYGECYKVSCLEIPGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPG 289
            ||:|.::.|.....|.:....|    |....|.:||.|..||:||.||.|:.|:||..|...|. 
 Worm    66 EIEQLSVTREAGRQKRQTPQTC----CSCGIGETGPAGVPGQEGAPGNDGKAGQPGAPGADADE- 125

Human   290 IEGPIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPD 354
                         .||..:..||..|    .|.                 ||||..|.||.:|| 
 Worm   126 -------------QGFHYKAPEFCFD----CPA-----------------GPPGAVGGPGPKGP- 155

Human   355 GYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRGP 419
              ||..|.|||.|..|..|:.|.||.||||||.|..|..|..|.:|.        .:..|.|   
 Worm   156 --PGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQ--------TRSAPSP--- 207

Human   420 KGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484
               ||:.|.||..||||..||.|..|.||..||                  |||.|..|..||||
 Worm   208 ---PGQPGQPGEPGSPGEPGPDGRAGHPGRNGP------------------PGPPGDNGGQGEPG 251

Human   485 KQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPG 525
            |.|..|:.|.|      |..||||....    .|.||.|||
 Worm   252 KDGEDGENGAA------GAAGPKGSCDH----CPPPRTAPG 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256 7/30 (23%)
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757 3/5 (60%)
gly_rich_SclB <255..>513 CDD:468478 92/257 (36%)
Triple-helical region 257..590 97/269 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 97/269 (36%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 15/39 (38%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541
Nonhelical region 591..1019
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757
VWA 833..1007 CDD:459670
col-179NP_509870.1 Col_cuticle_N 15..59 CDD:198156
gly_rich_SclB <93..>269 CDD:468478 90/251 (36%)
Blue background indicates that the domain is not in the aligned region.

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