| Sequence 1: | NP_001840.3 | Gene: | COL6A2 / 1292 | HGNCID: | 2212 | Length: | 1019 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_509162.1 | Gene: | col-173 / 180960 | WormBaseID: | WBGene00000746 | Length: | 325 | Species: | Caenorhabditis elegans |
| Alignment Length: | 227 | Identity: | 88/227 - (38%) |
|---|---|---|---|
| Similarity: | 100/227 - (44%) | Gaps: | 57/227 - (25%) |
- Green bases have known domain annotations that are detailed below.
|
Human 382 GPPGEIGAKGSKGYQGNSGAPGSPGVKGA----------------KGGPGPRGPKGEPGRRGDPG 430
Human 431 TKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDA 495
Human 496 GPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADP 560
Human 561 GPPGEPGPRGPRGVPGPEGE----PGPPGDPG 588 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| COL6A2 | NP_001840.3 | Nonhelical region | 21..256 | ||
| vWA_collagen_alpha_1-VI-type | 43..231 | CDD:238757 | |||
| gly_rich_SclB | <255..>513 | CDD:468478 | 51/146 (35%) | ||
| Triple-helical region | 257..590 | 88/227 (39%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 257..588 | 86/225 (38%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 366..368 | ||||
| Cell attachment site. /evidence=ECO:0000255 | 426..428 | 0/1 (0%) | |||
| Collagen | 487..556 | CDD:460189 | 30/68 (44%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 489..491 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 498..500 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 539..541 | 0/1 (0%) | |||
| Nonhelical region | 591..1019 | ||||
| vWA_collagen_alpha_1-VI-type | 612..803 | CDD:238757 | |||
| VWA | 833..1007 | CDD:459670 | |||
| col-173 | NP_509162.1 | Col_cuticle_N | 22..72 | CDD:198156 | |
| Collagen | <135..>163 | CDD:460189 | 13/27 (48%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||