DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and col-172

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_001024635.1 Gene:col-172 / 180934 WormBaseID:WBGene00000745 Length:341 Species:Caenorhabditis elegans


Alignment Length:297 Identity:105/297 - (35%)
Similarity:127/297 - (42%) Gaps:48/297 - (16%)


- Green bases have known domain annotations that are detailed below.


Human   310 GEFGADGRKGAPG-LAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKG 373
            |.||...|....| .|.:..:.||..:..:.......|..|..|.  ||.....|...||.....
 Worm    74 GAFGRGKRTIRSGDRAKREWSFGQFFERSQRATGSGSGSSGGYGT--YPPAPTVPPTYGDYKVAA 136

Human   374 ------------DPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRR 426
                        ..|..|..||||:.|..|..|..|..|.||..|:.....|..|          
 Worm   137 VEEFQPASCCTCQQGPVGPAGPPGDDGLDGIDGKSGVDGPPGRDGILLPPLGQAP---------- 191

Human   427 GDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGD 491
             :|.....||..||.|..|..||.||||..|..|..|.||::|:|||:||.|..|.||.:|.:|:
 Worm   192 -EPCIICPPGQTGPPGFPGQKGPNGPRGSPGLQGQDGKKGEQGMPGPQGPTGRPGRPGPKGPKGE 255

Human   492 PGD----AGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKG 552
            .|.    |||      .||.|.||.||  .||.|||.|..|.|||:|..|.:||.||.|..|::|
 Worm   256 DGRVIMVAGP------AGPAGPPGLPG--TPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKEG 312

Human   553 EKGEPADPGPPGEPGPRGPRGVPGP-EGEPGPPGDPG 588
            .:         ||.||:||:|:.|. |..|.|...||
 Worm   313 AR---------GERGPQGPQGLKGSCEHCPLPRLPPG 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757
gly_rich_SclB <255..>513 CDD:468478 71/219 (32%)
Triple-helical region 257..590 105/297 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 103/295 (35%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 32/72 (44%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541 0/1 (0%)
Nonhelical region 591..1019
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757
VWA 833..1007 CDD:459670
col-172NP_001024635.1 Col_cuticle_N 19..69 CDD:198156
gly_rich_SclB <149..>327 CDD:468478 83/205 (40%)
Blue background indicates that the domain is not in the aligned region.

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