DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and dpy-8

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_508873.1 Gene:dpy-8 / 180785 WormBaseID:WBGene00001070 Length:452 Species:Caenorhabditis elegans


Alignment Length:294 Identity:95/294 - (32%)
Similarity:111/294 - (37%) Gaps:92/294 - (31%)


- Green bases have known domain annotations that are detailed below.


Human   340 GPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGS 404
            |||   |.||..||||.||:||..|..||.|....|                       ...|..
 Worm    98 GPP---GPPGAPGPDGQPGDAGRQGRSGDDGFDIQP-----------------------ESEPEL 136

Human   405 PGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRG 469
            |.|....|.|||||.:||.|..|:||.                     .|:.|.:|.:|..|..|
 Worm   137 PCVICPAGPPGPRGAQGERGMTGNPGM---------------------AGMQGTIGMEGVDGGPG 180

Human   470 LPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRG 534
            ||||.||:                  |.||..|..||.||....|....||.|.||.:|..||.|
 Worm   181 LPGPPGPK------------------GERGPLGPYGPPGDTVVAGVGIKGPLGPPGPQGMKGPPG 227

Human   535 PEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLTECDVMTYVR 599
            |.|       ||    ..:.|:|..||..|..|..|..|..|.||..|||||||:.    .:|  
 Worm   228 PSG-------KG----SNQPGQPGQPGDIGGIGKTGKMGGYGMEGPAGPPGDPGMP----ASY-- 275

Human   600 ETCGCCDCEKRCGA---LDVVFVIDSSESIGYTN 630
                   |...||.   |..:|....:.:.||:|
 Worm   276 -------CPSDCGVQPILTEMFPTPFTPTAGYSN 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757
gly_rich_SclB <255..>513 CDD:468478 54/172 (31%)
Triple-helical region 257..590 86/249 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 84/247 (34%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 22/68 (32%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 1/1 (100%)
Cell attachment site. /evidence=ECO:0000255 539..541 0/1 (0%)
Nonhelical region 591..1019 9/43 (21%)
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757 6/22 (27%)
VWA 833..1007 CDD:459670
dpy-8NP_508873.1 Col_cuticle_N 7..58 CDD:198156
gly_rich_SclB <115..>258 CDD:468478 64/215 (30%)
Blue background indicates that the domain is not in the aligned region.

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