DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment COL6A2 and col-12

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_505678.1 Gene:col-12 / 179453 WormBaseID:WBGene00000601 Length:316 Species:Caenorhabditis elegans


Alignment Length:311 Identity:111/311 - (35%)
Similarity:130/311 - (41%) Gaps:87/311 - (27%)


- Green bases have known domain annotations that are detailed below.


Human   285 QGDPGIEGPI---GFPGPKGVPGF--KGEKGEFGADGRKGAPGLAGKNGTDGQ-----KGKLGRI 339
            ||..|:||.|   .:....||.|.  |..:..:|.|...|  |..|.:|  |.     .|..|..
 Worm    73 QGVSGVEGRIKRDAYHRSLGVSGASRKARRQSYGNDAAVG--GFGGSSG--GSCCSCGSGAAGPA 133

Human   340 GPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGR-----PGRRGPPGEIGAKGSKGYQGNS 399
            |.||..|.|||   ||.||..|:||:...:.....|..     |.  ||||..||.|.|   |.|
 Worm   134 GSPGQDGAPGN---DGAPGAPGNPGQDASEDQTAGPDSFCFDCPA--GPPGPSGAPGQK---GPS 190

Human   400 GAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGE----KGDPGPEGPRGLAGEVG 460
            ||||:||..|....|||.||.|.||..|.||:.|:.|:.|..|:    .|.|||.||        
 Worm   191 GAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGPAGP-------- 247

Human   461 NKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPG 525
                      ||..||.||.|:||:.|| ..||..||:||:|.||..|.||:        .||||
 Worm   248 ----------PGSPGPAGAPGQPGQAGS-SQPGGPGPQGDAGAPGAPGAPGQ--------AGAPG 293

Human   526 EKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPG 576
            :.||.|..|                      ..|..||       ||..||
 Worm   294 QDGESGSEG----------------------ACDHCPP-------PRTAPG 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757
gly_rich_SclB <255..>513 CDD:468478 96/246 (39%)
Triple-helical region 257..590 111/311 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 111/311 (36%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 22/68 (32%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541 0/1 (0%)
Nonhelical region 591..1019
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757
VWA 833..1007 CDD:459670
col-12NP_505678.1 Col_cuticle_N 17..69 CDD:198156
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.