DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment COL6A2 and col-123

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_501756.2 Gene:col-123 / 177823 WormBaseID:WBGene00000697 Length:348 Species:Caenorhabditis elegans


Alignment Length:352 Identity:124/352 - (35%)
Similarity:150/352 - (42%) Gaps:79/352 - (22%)


- Green bases have known domain annotations that are detailed below.


Human   211 LYRN--DYATMLPDS-TEI--DQDTINRIIKVMKHEAYGECYKV-----------SCLEIPGP-S 258
            :|||  ||.|.|.|. .|:  |.|.:.|.|..::..:.|..::.           ...|.|.| |
 Worm    28 VYRNVQDYWTELDDQMVEVRKDLDDMWREIMHIQSNSLGSVFRARRPARGAYDEGDYKEAPPPTS 92

Human   259 GPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKGVPGFKGE---KGEFGADGRKGA 320
            .|        :.|...||..|..     |...:.|.| |.|......:.:   |.:.|..|.|||
 Worm    93 YP--------SSGGYDEPSAPAH-----DTAPQAPAG-PAPTSPDSCQCQAENKCKAGPQGAKGA 143

Human   321 PGLAGKNGTDGQKGKLG---------RIGPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPG 376
            |||.|.||..|..||.|         ..|...|...|  :||.|.||..|.||.||.:|..|.||
 Worm   144 PGLPGPNGVPGLDGKPGLDSLDVEPQAQGTGTCFHCP--QGPPGSPGPMGHPGARGMKGSDGQPG 206

Human   377 RPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAK-----GGPGPRGPKGEPGRRGDPGTKGSPG 436
            :||:.|.||:.|..|..|:||..|..|.||.||..     |.|||:|.|||.|.   ||.:|:||
 Worm   207 QPGKDGDPGKPGEMGPNGFQGKVGPDGFPGEKGGDGRRLIGRPGPKGQKGETGH---PGAQGTPG 268

Human   437 SDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPG-DA----- 495
            .:||.|..||.||:|.                  |||:|.|||.|.||.:|..|.|| ||     
 Worm   269 HNGPTGPPGDAGPDGG------------------PGPQGEQGADGGPGSEGKVGRPGRDAEYCHC 315

Human   496 GPRGDSGQPGPKGDPGRPGFSYPGPRG 522
            ..||..|  |..|..|..|..|....|
 Worm   316 PARGSHG--GSSGGGGGGGGEYKATGG 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256 15/60 (25%)
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757 11/24 (46%)
gly_rich_SclB <255..>513 CDD:468478 106/281 (38%)
Triple-helical region 257..590 108/290 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 108/290 (37%)
Cell attachment site. /evidence=ECO:0000255 366..368 1/1 (100%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 15/42 (36%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 1/1 (100%)
Cell attachment site. /evidence=ECO:0000255 539..541
Nonhelical region 591..1019
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757
VWA 833..1007 CDD:459670
col-123NP_501756.2 Col_cuticle_N 6..57 CDD:198156 12/28 (43%)
gly_rich_SclB <80..>310 CDD:468478 99/266 (37%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.