| Sequence 1: | NP_001840.3 | Gene: | COL6A2 / 1292 | HGNCID: | 2212 | Length: | 1019 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_501526.1 | Gene: | col-117 / 177694 | WormBaseID: | WBGene00000691 | Length: | 299 | Species: | Caenorhabditis elegans |
| Alignment Length: | 274 | Identity: | 102/274 - (37%) |
|---|---|---|---|
| Similarity: | 113/274 - (41%) | Gaps: | 70/274 - (25%) |
- Green bases have known domain annotations that are detailed below.
|
Human 260 PKGYRGQKGAKGNMGEPGEPGQKGRQGD---PGIEGPIGFPGPKGVPGFKGEKGEFGADGRKGAP 321
Human 322 GLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGE 386
Human 387 IGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKG--EKGDPGP 449
Human 450 EGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPG 514
Human 515 FSYPGPRGAPGEKG 528 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| COL6A2 | NP_001840.3 | Nonhelical region | 21..256 | ||
| vWA_collagen_alpha_1-VI-type | 43..231 | CDD:238757 | |||
| gly_rich_SclB | <255..>513 | CDD:468478 | 94/257 (37%) | ||
| Triple-helical region | 257..590 | 102/274 (37%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 257..588 | 102/274 (37%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 366..368 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 426..428 | 0/1 (0%) | |||
| Collagen | 487..556 | CDD:460189 | 21/42 (50%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 489..491 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 498..500 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 539..541 | ||||
| Nonhelical region | 591..1019 | ||||
| vWA_collagen_alpha_1-VI-type | 612..803 | CDD:238757 | |||
| VWA | 833..1007 | CDD:459670 | |||
| col-117 | NP_501526.1 | Col_cuticle_N | 12..64 | CDD:198156 | |
| gly_rich_SclB | <71..>279 | CDD:468478 | 100/272 (37%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||