DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and col-109

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_500138.1 Gene:col-109 / 176988 WormBaseID:WBGene00000683 Length:291 Species:Caenorhabditis elegans


Alignment Length:296 Identity:102/296 - (34%)
Similarity:117/296 - (39%) Gaps:85/296 - (28%)


- Green bases have known domain annotations that are detailed below.


Human   320 APGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPP 384
            |..:||...|  .:.|...:|..||       ...|:||..|.||..|..|..|.|||||..|.|
 Worm    70 AAAIAGNLTT--IRNKRQAVGCAGC-------CKPGHPGRPGLPGRNGKPGVPGAPGRPGTPGRP 125

Human   385 GEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGP 449
            ..:       .:.....|.:|...|..|..||.|..|:|||.|:||..||||:         |||
 Worm   126 PIV-------CEEQDVPPCNPCPPGPPGPQGPTGNSGQPGRPGNPGRPGSPGT---------PGP 174

Human   450 EGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPG 514
            .||         .||.||.|.|                              |..|.||:||||.
 Worm   175 VGP---------NGASGDSGAP------------------------------GNDGEKGEPGRPA 200

Human   515 FSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEG 579
            .|.|   ..|||.|.||..|..|..||.|..|..|:.|:.|.|..|||||..|..||.|.||..|
 Worm   201 QSTP---STPGEPGNPGDAGATGAPGDDGAPGRDGQPGQSGPPGPPGPPGNVGEAGPPGKPGQPG 262

Human   580 EPGPPGDPGLTECDVMTYVRETCGCCDCEKRCGALD 615
            .|||.|:.|:                 |.|.| |||
 Worm   263 LPGPQGERGI-----------------CPKYC-ALD 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757
gly_rich_SclB <255..>513 CDD:468478 59/192 (31%)
Triple-helical region 257..590 96/269 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 95/267 (36%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 24/68 (35%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541 0/1 (0%)
Nonhelical region 591..1019 6/25 (24%)
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757 3/4 (75%)
VWA 833..1007 CDD:459670
col-109NP_500138.1 Col_cuticle_N 12..63 CDD:198156
gly_rich_SclB <96..>231 CDD:468478 67/192 (35%)
Blue background indicates that the domain is not in the aligned region.

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