| Sequence 1: | NP_001840.3 | Gene: | COL6A2 / 1292 | HGNCID: | 2212 | Length: | 1019 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_499982.1 | Gene: | col-103 / 176901 | WormBaseID: | WBGene00000677 | Length: | 371 | Species: | Caenorhabditis elegans |
| Alignment Length: | 296 | Identity: | 108/296 - (36%) |
|---|---|---|---|
| Similarity: | 116/296 - (39%) | Gaps: | 67/296 - (22%) |
- Green bases have known domain annotations that are detailed below.
|
Human 350 NRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGG- 413
Human 414 -----------------PGPRGPKGEPGRRGDPGTKGSPGSDGPKGEK---------------GD 446
Human 447 PGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPG 511
Human 512 RPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPG 576
Human 577 PEGEPGPPGDPGLTECDVMTYVRETCGCCDCEKRCG 612 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| COL6A2 | NP_001840.3 | Nonhelical region | 21..256 | ||
| vWA_collagen_alpha_1-VI-type | 43..231 | CDD:238757 | |||
| gly_rich_SclB | <255..>513 | CDD:468478 | 69/195 (35%) | ||
| Triple-helical region | 257..590 | 103/272 (38%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 257..588 | 102/270 (38%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 366..368 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 426..428 | 0/1 (0%) | |||
| Collagen | 487..556 | CDD:460189 | 28/68 (41%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 489..491 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 498..500 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 539..541 | 0/1 (0%) | |||
| Nonhelical region | 591..1019 | 5/22 (23%) | |||
| vWA_collagen_alpha_1-VI-type | 612..803 | CDD:238757 | 1/1 (100%) | ||
| VWA | 833..1007 | CDD:459670 | |||
| col-103 | NP_499982.1 | Col_cuticle_N | 6..55 | CDD:198156 | |
| Blue background indicates that the domain is not in the aligned region. | |||||