| Sequence 1: | NP_001840.3 | Gene: | COL6A2 / 1292 | HGNCID: | 2212 | Length: | 1019 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_497131.1 | Gene: | col-88 / 175170 | WormBaseID: | WBGene00000663 | Length: | 302 | Species: | Caenorhabditis elegans |
| Alignment Length: | 190 | Identity: | 82/190 - (43%) |
|---|---|---|---|
| Similarity: | 102/190 - (53%) | Gaps: | 21/190 - (11%) |
- Green bases have known domain annotations that are detailed below.
|
Human 340 GPPGCKGDPGNRGPDGYPGEAGSPGERG-DQGGKGDP--------GRPGRRGPPGEIGAKGSKGY 395
Human 396 QGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGE--KGDPGPEGPRGLAGE 458
Human 459 VGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGD----PGRPG 514 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| COL6A2 | NP_001840.3 | Nonhelical region | 21..256 | ||
| vWA_collagen_alpha_1-VI-type | 43..231 | CDD:238757 | |||
| gly_rich_SclB | <255..>513 | CDD:468478 | 80/187 (43%) | ||
| Triple-helical region | 257..590 | 82/190 (43%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 257..588 | 82/190 (43%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 366..368 | 1/2 (50%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 426..428 | 0/1 (0%) | |||
| Collagen | 487..556 | CDD:460189 | 12/32 (38%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 489..491 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 498..500 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 539..541 | ||||
| Nonhelical region | 591..1019 | ||||
| vWA_collagen_alpha_1-VI-type | 612..803 | CDD:238757 | |||
| VWA | 833..1007 | CDD:459670 | |||
| col-88 | NP_497131.1 | Col_cuticle_N | 12..57 | CDD:460226 | |
| gly_rich_SclB | <111..>269 | CDD:468478 | 71/163 (44%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||